BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943479
Length=2881
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02510.1 | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159 | ... 1048 0.0
> AT4G02510.1 | Symbols: TOC159, TOC86, PPI2, TOC160, ATTOC159
| translocon at the outer envelope membrane of chloroplasts
159 | chr4:1104766-1109600 FORWARD LENGTH=4752
Length=4752
Score = 1048 bits (567), Expect = 0.0
Identities = 1065/1301 (82%), Gaps = 51/1301 (4%)
Strand=Plus/Plus
Query 791 AGGTGTTGTTGGGTCTGAAAGTGATGAAGACACTAAAGGGATGATAATAGGGAGTTCAAA 850
||| |||| ||||||||||||||| ||||| ||| ||| ||||||| | |||||||| |
Sbjct 1876 AGG-GTTGATGGGTCTGAAAGTGAAGAAGAAACTGAAGAGATGATATTTGGGAGTTCTGA 1934
Query 851 ATCTGGAGAACAGTTCTTGGAAGAGTTGGAAGAGGTTTCTTCTGGTATTCA-AGTC-CAT 908
| ||| | |||||||||| | |||||||||| ||| ||||||||||| | | || | |||
Sbjct 1935 AGCTGCAAAACAGTTCTTAGCAGAGTTGGAAAAGGCTTCTTCTGGTA-T-AGAGGCACAT 1992
Query 909 TCCGATGAAACAAACATTCCTAACCATCACGT-TGATAGGATTGATAGCCAGATTTTCAC 967
|| |||||| |||||||| ||||| || | || |||||||||||| |||||||| ||||
Sbjct 1993 TCTGATGAAGCAAACATTTCTAACAAT-ATGTCAGATAGGATTGATGGCCAGATTGTCAC 2051
Query 968 TGATTCTGACGAGGAAGTAGACACGA-ATGATGACGTTGAGGAGAAAACT-TTTGATTCT 1025
|||||||||||||| |||||||| | | ||||| | ||||||||||| | |||||| ||
Sbjct 2052 CGATTCTGACGAGGATGTAGACAC-AGAGGATGAAGGTGAGGAGAAAA-TGTTTGATACT 2109
Query 1026 GCGGCTTTGACTGCG-TTTCTAAAGGCAGCCAC---TAGTGGAAGTTCAGATGGTGGTAA 1081
|| |||||| ||||| ||| | ||||||||||| | ||||||||||||| ||||| ||
Sbjct 2110 GCAGCTTTGGCTGCGCTTT-TGAAGGCAGCCACTGGTGGTGGAAGTTCAGAAGGTGGCAA 2168
Query 1082 TTTTACCAT---ATCGCAGGATGTAATGAAGCTTTTTTCTATGGAACCTCAAGCTGGTCT 1138
||||||||| ||| ||||||| | ||||||||| |||||||| | | |||||| |
Sbjct 2169 TTTTACCATAACATCTCAGGATGGCACGAAGCTTTTCTCTATGGATCGACCTGCTGGTTT 2228
Query 1139 GGGTTCCTCTTTAAGATTTGTTCAA-TCT-C--CAGCCCCACTTCCAAATCATTCCAACA 1194
| |||| || ||||| || || || | |||| |||| | |||| | ||||||||
Sbjct 2229 GAGTTCATCGTTAAG-GCCCTTGAAGCCTGCAGCAGCTCCACGTGCAAACCGTTCCAACA 2287
Query 1195 T-TTTTCCCAGTCTAAAAGTTCA-AATGGGTGGA-GAGAGTGAGAATAACTTGAGCGAGG 1251
| |||||| | ||| || | ||| ||| || || |||| ||||| ||||||||||||||
Sbjct 2288 TCTTTTCCAATTCT-AATG-TCACAAT-GGCAGATGAGACTGAGATTAACTTGAGCGAGG 2344
Query 1252 AAGAGAAACAGAAGTTAGAAAAGTTGCAAAGTATGCGTGTAAAATATTTGCGTCTTGTGC 1311
||||||||||||| ||||||||||||||||| | ||||| || | |||||| ||| |||
Sbjct 2345 AAGAGAAACAGAAATTAGAAAAGTTGCAAAGCCTCCGTGTGAAGTTTTTGCGGCTTTTGC 2404
Query 1312 ATAGGTTGGAG-CAGTCTGTAGAAGATTCAATAGCAGTGCATGTGCTTTATGC-TCTTGC 1369
| ||||||| | || || | |||||||||||| |||| ||| || ||||| | ||||||
Sbjct 2405 AAAGGTTGG-GTCATTCGGCAGAAGATTCAATTGCAGCGCAGGTTCTTTA-CCGTCTTGC 2462
Query 1370 ATTTCTTACTTTGAGACATTCTGGTCAGTTGTTCAGTCTTGACGCTGCAAAGAAGATGGT 1429
| | ||| || |||||| | || ||||| ||||||||||| ||||||||||||| ||
Sbjct 2463 ACTACTTGCTGGGAGACAAGCAGGGCAGTTATTCAGTCTTGATGCTGCAAAGAAGAAGGC 2522
Query 1430 TATGGAGTCTGAGGCTAAGGG-AA--AAGACTTAAAT-TTCTCCCTAAACATATTGGTCC 1485
| |||||||||||||| |||| || |||| || || ||||||||||||||| ||||||
Sbjct 2523 TGTGGAGTCTGAGGCTGAGGGCAACGAAGAATT-GATCTTCTCCCTAAACATACTGGTCC 2581
Query 1486 TTGGAAAATCCGGAGTGGGGAAAAGTGCTACGATAAATTCCATCTTGGGTGATCAGAAGG 1545
|||||||| |||| ||||| ||||||||||| ||||||||||| ||||| | |||| |
Sbjct 2582 TTGGAAAAGCCGGGGTGGGAAAAAGTGCTACTATAAATTCCATTTTGGGAAACCAGATTG 2641
Query 1546 CATCTATTCATGCATTTCAAC-CATCCACCACTTCGGTTCTAGAAATTTCTGGAACGGTG 1604
| || ||| |||| ||| | | || |||||||||||| |||||||||||||||||||
Sbjct 2642 CGTCCATTGATGCTTTTGGGCTC-TCAACCACTTCGGTTAGAGAAATTTCTGGAACGGTG 2700
Query 1605 GGTGGTGTCAAGGTCACAATCATCGACACTCCGGGCTTAAAGTCTTCTGCCATGGATCAA 1664
|||||||||| | || | || || |||||||| || |||||| |||| |||||||||
Sbjct 2701 AATGGTGTCAAGATTACCTTTATTGATACTCCGGGTTTGAAGTCTGCTGCGATGGATCAA 2760
Query 1665 AGCGCCAATTCCAAAATGTTGTCTTCAGTGAAGAAGATAATGAAGAAGTGTCCCCCTGAT 1724
|| | ||| | ||||||||||| || || |||||| |||||||||||||||||||||||
Sbjct 2761 AGTACAAATGCAAAAATGTTGTCCTCTGTAAAGAAGGTAATGAAGAAGTGTCCCCCTGAT 2820
Query 1725 ATGGTTCTTTATGTTGATCGTCTTGATGCTCAGAATAGAGG-CTTGGACAATATGCCCTT 1783
|| || || ||||| ||||||||||| | |||| || || |||| ||||| |||||||
Sbjct 2821 ATTGTACTATATGTAGATCGTCTTGACACCCAGACCAG-GGACTTGAACAATTTGCCCTT 2879
Query 1784 GCTAAGGACGATTACTGCGTCTCTTGGTTCATCCATATTGAAAAACGCCATAGTGTTATT 1843
|||||||||||||||||| ||||||||| ||||||||| ||||||||| |||||| |||
Sbjct 2880 GCTAAGGACGATTACTGCTTCTCTTGGTACATCCATATGGAAAAACGCTATAGTGACATT 2939
Query 1844 GACCCATGCTGG-TTGTGCCCCTCCTGATGGCCCGTATGACACTCCTTTGAGCTATGATG 1902
||||||||| || || |||||||||||||||||| | || ||| || |||||||||||||
Sbjct 2940 GACCCATGC-GGCTTCTGCCCCTCCTGATGGCCCATCTGGCACCCCATTGAGCTATGATG 2998
Query 1903 CGTTTGTAGAACAGTGCTCACATATTGTTCAACAGTCTATTGGACATGCCGTTGGTGATC 1962
|||||||| ||||||||||||||||| ||||||||||| ||||| || ||||| ||||
Sbjct 2999 TGTTTGTAGCGCAGTGCTCACATATTGTGCAACAGTCTATAGGACAGGCTGTTGGAGATC 3058
Query 1963 TACGCTTGATAAACCCAAGAT-TAG-TGAA-CAAAGTTTCTCTTGTTGAGAATCATCCCT 2019
|||||||||| || ||||| | | | |||| | |||||| |||||||||||||| ||||
Sbjct 3059 TACGCTTGATGAATCCAAG-TCT-GATGAATC-CAGTTTCACTTGTTGAGAATCACCCCT 3115
Query 2020 TATGTAGGAAGAACCGGGAGGGAGTGAAGGTTCTCCCAAAT 2060
| ||||||||||||||||||||||||||||||||||| |||
Sbjct 3116 TGTGTAGGAAGAACCGGGAGGGAGTGAAGGTTCTCCCGAAT 3156
Score = 296 bits (160), Expect = 8e-79
Identities = 202/222 (91%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 2088 CCTCTAGAAGCATTGGACCATCGTAAATTATTTGGTTTCCAAGTTCCAGCGCTGCCTCTC 2147
|||| |||| ||||||||||||||||| |||||||||||| |||| | | | |||||||
Sbjct 3235 CCTCAAGAACCATTGGACCATCGTAAAGTATTTGGTTTCCGAGTTAGATCCCCGCCTCTC 3294
Query 2148 CCTAACTTGTTGTCTTGGCTGTTGCAGTCCCGTGCACATCCTAAGCTCCCTGCAGATCAA 2207
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 3295 CCTTACTTGTTGTCTTGGCTGTTGCAGTCCCGTGCACATCCTAAGCTCCCTGGAGACCAA 3354
Query 2208 GGTGGTGATAGTGTCGATTCTGCTATCGAAATTGATG-TGT--CTGATTCTGAGCAGGAA 2264
|||||||||||||| || |||| |||||||||||||| ||| |||||||||||||||||
Sbjct 3355 GGTGGTGATAGTGTTGACTCTGATATCGAAATTGATGATGTGTCTGATTCTGAGCAGGAA 3414
Query 2265 GATGGGGAAGATGACGAGTATGAACAGCTGCCACCATTTAAG 2306
|||||||||||||| |||||||| ||||||||||||||||||
Sbjct 3415 GATGGGGAAGATGATGAGTATGACCAGCTGCCACCATTTAAG 3456
Score = 202 bits (109), Expect = 2e-50
Identities = 273/349 (78%), Gaps = 23/349 (7%)
Strand=Plus/Plus
Query 2546 CCAAGTGACCAAGGACAAGAAAGAGTTCAACATTCATCTAGACTCCTCTATCTGTGCTAA 2605
|||||| |||||||||||||||||||||||||||||||| ||||||||| | | ||||||
Sbjct 3882 CCAAGTCACCAAGGACAAGAAAGAGTTCAACATTCATCTGGACTCCTCTGTGTCTGCTAA 3941
Query 2606 GCACGGGGACAATGGATCTACCATGGCAGGGCTT-GTTATCCAGGGAA-GTGAG-CAA-C 2661
||||||||| |||||||| |||||||||||| || | ||| ||| || || || ||| |
Sbjct 3942 GCACGGGGAGAATGGATCCACCATGGCAGGG-TTCGATATTCAG--AATGT-AGGCAAGC 3997
Query 2662 TTATGT-ATACCT--TAAAAGGAGAAACCAAATTCAAGAACTCGAGGAGGAATGAGATGA 2718
|| ||| | | | ||||||||||||||||||||| | ||||| ||| ||| |
Sbjct 3998 AGCTGGCATATGTGGTCAGAGGAGAAACCAAATTCAAGAATTTGAGGAAGAACAAGACAA 4057
Query 2719 CTCTTGGAGGG-CTAGTGACATTCTTTGGTGGGAAAATTC-CCAGTGGTCTCAAACTCGA 2776
|| |||||||| | |||||||||||| || | ||| || | ||| ||| ||||||||||
Sbjct 4058 CTGTTGGAGGGTC-AGTGACATTCTTGGGAGAGAACAT-CGCCACTGGGGTCAAACTCGA 4115
Query 2777 GAAACAGATCGC-CTTGGGAAAACGGGTCGTCCTCGTGGGAAATGCA--GGGACCACGAG 2833
| | || || || || ||||||| || | || || ||||| | ||| ||||| | | |
Sbjct 4116 GGACCAAATAGCACTGGGGAAAA-GGTTGGTGCTTGTGGGCA--GCACTGGGACAATGCG 4172
Query 2834 GTCACAAGGAGACTCAGCTTATGAAG-GAAACCTTGAGGTCAGGCTTAG 2881
||||| ||||| || || |||| | ||| ||| ||||||||||||||
Sbjct 4173 ATCACAGGGAGATTCGGCCTATGGTGCGAA-CCTCGAGGTCAGGCTTAG 4220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143176455322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5