BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943492
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02405.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1478 0.0
> AT4G02405.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:1057854-1059671
REVERSE LENGTH=1147
Length=1147
Score = 1478 bits (800), Expect = 0.0
Identities = 960/1034 (93%), Gaps = 23/1034 (2%)
Strand=Plus/Plus
Query 21 ATGATCTACTTGAAACCTCTGCTTCCGTCAGAGGTGTTAGCTTCTTCTTGGTTCAAAAAG 80
||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||
Sbjct 1 ATGATCTACTTGAAACCTCTGGTTCCGTCAGAGGTGTTAGCTTCGTCTTCATTCAAAAAG 60
Query 81 TCAGCGATATCATTACGGATGCAGAGTCTATGTGCTCCTCCT-C--TACACTTTCCGGCC 137
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 61 TCAGCGATATCATTACGGATGCAGAGTCTATGTGCTCCTCCTCCTGTACACTTTCCGGCC 120
Query 138 ACCGCACTCCGTCGTTGTCGAACTCCGA-GGTCCGCAGTTCGTTCCTTACGAGCAGAGCA 196
|||||| ||||||| ||||||||||||| | | ||| ||||||||||| | | ||||
Sbjct 121 ACCGCAATCCGTCGCTGTCGAACTCCGACGCT-CGCCGTTCGTTCCTT---A-C-GAGC- 173
Query 197 TAGAGAAGAGAACGACCCTTTGATTCAATCAGCTTTAGATTCAGCATCTCTTCGTCTGCG 256
|||||| | | | |||| ||||||||||||||||| |||||| |||| |||||||||
Sbjct 174 -AGAGAA-TG-A-G--CCTTCGATTCAATCAGCTTTAGTTTCAGCGTCTCATCGTCTGCG 227
Query 257 AGAAACCAATCGAACAGAGCCTCTCTTCATCGACCCATATGCCGCTTGTTTCTTACCTCC 316
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 228 AGAAACCAATCGAACAGAGCCTCTTTTCATCGACCCGTATGCCGCTTGTTTCTTACCTCC 287
Query 317 TTACACAAAGAAGGAATTGGACA-CCAATG---AACAACAACATTACTGTCTTGCAACAA 372
||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||
Sbjct 288 TTACACAAAGAAGGATTTGGACATCC-ATGAACAACAACAACATTACTGTCTTGCAACAA 346
Query 373 AGTTCATCGATGACAAGTTGTTAGATATAACTAAACGAATTGATGGACTTAAGCAGGTTG 432
||||||||||||| ||||||||||| ||| ||||||| |||||||| || ||||||||||
Sbjct 347 AGTTCATCGATGATAAGTTGTTAGAAATAGCTAAACGCATTGATGGGCTAAAGCAGGTTG 406
Query 433 TCTTGTTCACAGATGGCATGGATACTCGACCTTATAGGCTTAATTGGCCAACTTCCACTA 492
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 TATTGTTCACAGATGGGATGGATACTCGACCTTATAGGCTTAATTGGCCAACTTCCACTA 466
Query 493 TGATCTTTGATGTATCACCTGAAAAGGTTTTCGAAATAGCATCTGAAAAGCTTCAAGGTG 552
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 467 TGATCTTTGATGTATCACCGGAAAAAGTTTTCGAAATAGCATCTGAAAAGCTTCAAGGCG 526
Query 553 TGGGAGCTAGGATCCCTAAAAGTTGCTTATTCTTTCACATTCCCGTGGAATCCGGGAACA 612
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 527 TGGGAGCTAGGATCCCTAAAAGTTGCTTATTCTTTCACATTCCCGTGGAATTCGAGAACA 586
Query 613 TAGAGCAACGTTTACGATCAAAAGGGTTTAGTGGGAATCGACCAAGTATATGGGCAATGC 672
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 587 TAGAGCAACGTTTACGCTCAAAAGGGTTTAGTGGGAATCGGCCTAGTATATGGGCAATGC 646
Query 673 AGGGTTTACCTTACGAGTCACAATCAGGTTTTGAAGCTATTCTATCAGCCATTAGTAGTT 732
|||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 647 AGGGCTTACCTTTGGAGTCACAATCAGGTTTTGAAGCTATTCTATCGGCCATTAGTAGCT 706
Query 733 TGGCCATGAATGAATGCTATCTCATAGGAGAATTGCCTACAAATATAACACTCCAGTCAG 792
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 707 TGGCCATGAATGAATGCTATCTCATAGGAGAATTGCCTACAAATATAACACTACAGTCGG 766
Query 793 ATTTGTCAAATTGGATGGACAAACTGTTCATGAGCAATGGTTTTCGGGTGAAAGTAGTTA 852
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 ATTTGTCAAAGTGGATGGAGAAACTGTTCATGAGCAATGGTTTTCGGGTGAAAATAGTTA 826
Query 853 GCTATGAAGAGATTGCTGCGAGTTTAGGTGTTGCATTACCTTCACCAGTAAACCATGACA 912
||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||
Sbjct 827 GCTATGAAGAGATTGCTGCAAGTTTAGGTGTGGTATTACATTCACCAGTAAACCATGACA 886
Query 913 CGGTTCTGTTTATCGCACAACAGCTCAAGTTTTCAGATGATCAGATGGAGAAATGGAGAC 972
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 887 CGGTTCTCTTTATCGCACAACAGCTCAAGTTTTCAGATGATCAGATGGAGACATGGAGAC 946
Query 973 AAGAATTTCAAAGAGTGGAAGAAGACGGAGATGAACAAGGATTTGAAGAGCTCTGAATGA 1032
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||
Sbjct 947 AAGAATTTCAAAGAGTAGAAGAAGATGGAGATGAACAAGGATTTGAAGAGCTCTGA-TGA 1005
Query 1033 AACAAACAAAATGT 1046
| ||||||||||||
Sbjct 1006 AGCAAACAAAATGT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389532381
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5