BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943502
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02320.1 | Symbols: | Plant invertase/pectin methylesterase... 1964 0.0
> AT4G02320.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:1022725-1026118 REVERSE LENGTH=1557
Length=1557
Score = 1964 bits (1063), Expect = 0.0
Identities = 1265/1361 (93%), Gaps = 19/1361 (1%)
Strand=Plus/Plus
Query 36 TCTAACCTAAGCCATCGCGATCGCTGCGCATTCGATGACTGCCTCGAGCTACTCGATGAC 95
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 202 TCTAACCTAAGCCATCGCGATCTTTGCGCATTCGATGACTGTCTCGAGCTACTCGATGAC 261
Query 96 ACCGTCTTTGATCTCACCACCGCAG-TATCTGAGCTTCGGTCTCATTCTCCGGAGCTCCA 154
|||||||| |||||||||||||| | |||| |||| || ||||||||||||||||||||
Sbjct 262 ACCGTCTTCGATCTCACCACCGC-GATATCCAAGCTCCGATCTCATTCTCCGGAGCTCCA 320
Query 155 TAACGTCAAAATGTTTCTCAGCGCCGCGATGACGAATACAAGAACATGTCTCGATGGTTT 214
||||||||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 321 TAACGTCAAAATGTTACTCAGCGCCGCGATGACAAATACACGAACGTGTCTCGATGGTTT 380
Query 215 TGCTTCTAGCAACAACGA--CG-A---GAATAAT-A--ATAATAAGACGTATGGAGTGGC 265
||||||||| ||||||| | | ||||||| | ||||||| || |||||||||||
Sbjct 381 CGCTTCTAGCGACAACGATGAGAATTTGAATAATAATGATAATAAAACATATGGAGTGGC 440
Query 266 TGAGAGCTTGAAAGAGAGTCTTTTCAATATCTCTAGCCACGTCAGCGACTCGTTAGCTAT 325
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 441 TGAGAGCTTGAAGGAGAGTCTTTTCAATATCTCTAGCCACGTCAGCGACTCGTTGGCTAT 500
Query 326 GCTTGAGGAA-ATTCCAGGGAATATTCCGGGGAAACTAGAGGAGGACGTTGGGTTTCCGA 384
|||||| ||| ||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 501 GCTTGA-GAATATTCCAGGGCATATTCCGGGGAAAGTAAAGGAGGACGTTGGGTTTCCGA 559
Query 385 TGTGGGTCTCAGGGAGTGACCGGAACCTACTTCAAGATCCGGTGGATGAGACTAAGGTTA 444
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 560 TGTGGGTCTCAGGGAGTGACCGGAATCTACTTCAAGACCCGGTGGATGAGACTAAGGTTA 619
Query 445 ATCTCGTGGTGGCTCAAAATGGTACCAGCAACTACACAACCATCGGCGAGGCCGTATCTG 504
|||||||||||||||||||||| || | |||||||| ||||| ||||||||| |||| |
Sbjct 620 ATCTCGTGGTGGCTCAAAATGGGACTGGAAACTACACGACCATTGGCGAGGCCATATCCG 679
Query 505 CCGCTCCTAACTCGAGTGAAACCAGGTTTGTGATATATATAAAATGTGGGGAATATTTTG 564
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CCGCACCCAACTCGAGTGAAACCAGGTTTGTGATATATATAAAATGTGGGGAATATTTTG 739
Query 565 AAAACATTGAAATACCGAGGGAAAAGACAATGATAATGTTTATTGGGGATGGAATCGGAC 624
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 740 AAAACATTGAAATACCGAGGGAAAAGACAATGATAATGTTCATTGGAGATGGAATCGGAC 799
Query 625 GGACAGTAATAAAAGCTAACCGCAGCTTTGCAGATGGATGGACAGCATTTCACTCTGCGA 684
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 800 GGACAGTAATAAAAGCTAACCGCAGCTATGCAGATGGATGGACAGCCTTTCACTCTGCTA 859
Query 685 CCGTTGGCGTGAGAGGTAGTGGCTTCATAGCTAAGGACTTGTCGTTCGTGAATTATGCCG 744
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 860 CCGTTGGCGTGAGAGGTAGTGGCTTCATAGCTAAGGACTTATCATTCGTGAATTATGCCG 919
Query 745 GACTGGCTAGTCACCAGGCTGTGGCATTACGAAGCAGCTCTGACCTCTCTGCTTTCTACC 804
||| || | ||||| ||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 920 GACCGGAAAAACACCAAGCTGTGGCATTACGAAGTAGCTCTGACCTCTCTGCTTACTACC 979
Query 805 GATGCAGCTTTGAAAGCTTCCAAGACACTC-TTTATGTCCATTCACACAAACAGTTTTAT 863
|||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||
Sbjct 980 GATGCAGCTTTGAAAGCTACCAAGACAC-CATTTACGTCCATTCACACAAACAGTTTTAT 1038
Query 864 CGAGAGTGTGATATATATGGCACGGTCGATTTCATATTTGGTGATGCATCGGTTGTGTTC 923
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1039 CGAGAATGTGATATATATGGCACAGTCGATTTCATATTTGGTGACGCATCGGTTGTGTTC 1098
Query 924 CAGAATTGTAGTCTCTATGCTCGTAGACCAAATCCTAACCAAAAAATCATATATACCGCT 983
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1099 CAGAATTGTAGTCTCTATGCTCGTAGACCAAATCCTAACCAGAAAATCATATATACCGCT 1158
Query 984 CAAGGCCGGGAAAACTCAAGTCAACCCACGGGTATTTCTATAATCAGTAGCAAGATTTTG 1043
|||||||||||||||||| || ||||||| |||||||||||||| ||||||| |||||||
Sbjct 1159 CAAGGCCGGGAAAACTCACGTGAACCCACTGGTATTTCTATAATTAGTAGCAGGATTTTG 1218
Query 1044 GCCGCACCAGACTTGATCCCTGTGCAAGCCAACTTTAAAGCATATTTAGGTCGTCCGTGG 1103
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1219 GCGGCACCTGACTTGATCCCTGTGCAAGCCAACTTCAAAGCATATTTAGGTCGTCCGTGG 1278
Query 1104 CAACTATATTCTAGGACGGTTATCATGAAATCGTTTATTGGCGATCT-GGTGGATCCTGC 1162
||||||||||||||||||||||| |||||||||||||||| || || ||||||||||||
Sbjct 1279 CAACTATATTCTAGGACGGTTATTATGAAATCGTTTATTGATGA-CTTGGTGGATCCTGC 1337
Query 1163 CGGATGGTTGAAGTGGAAAGATGATTTTGCCCTTGAAACTTTATATTATGGAGAGTACAT 1222
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1338 CGGATGGTTGAAGTGGAAAGATGATTTTGCTCTTGAAACTTTGTATTATGGAGAGTACAT 1397
Query 1223 GAATGAAGGTCCCGGGTCGAACATGACAAACAGGGTCCAATGGCCTGGTTTTAAGCGTAT 1282
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1398 GAATGAAGGACCCGGTTCGAACATGACAAACCGGGTCCAATGGCCTGGTTTTAAGCGTAT 1457
Query 1283 CGAAACCGCAGAGGAAGCAACTCAATTCTCTGTTGGTCCATTTATCGAAGGTAACAAATG 1342
|||||||| ||| ||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 1458 CGAAACCGTAGAAGAAGCAAGTCAATTCTCTGTTGGTCCATTTATCGATGGTAACAAATG 1517
Query 1343 GCTTAACTCTACCG-GAATTCCTTTTACTATTGATCTCTGA 1382
|||||| ||||| | |||||||||||||| |||||||||||
Sbjct 1518 GCTTAATTCTAC-GAGAATTCCTTTTACTCTTGATCTCTGA 1557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5