BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943509

Length=480
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02250.1 | Symbols:  | Plant invertase/pectin methylesterase...   616    8e-176


> AT4G02250.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr4:983970-984523 FORWARD 
LENGTH=483
Length=483

 Score =  616 bits (333),  Expect = 8e-176
 Identities = 361/375 (96%), Gaps = 0/375 (0%)
 Strand=Plus/Plus

Query  86   GCAACCGCAACCGCACCAAAACTCGGCGTGATCGCTTTAAGCATCGCGTCCTCGAATGCT  145
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct  109  GCAACCGCAACCGCACCAAAACTAGGCGTGATCGCGTTAAGCATCGCGTCCTCAAATGCT  168

Query  146  TCGGACACATCTTTCTACATCAAAGCCAAACTAAAGCAAAAGAACCTCGAGCCGGCTTTA  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  169  TCGGACACATCTTTCTACATCAAAGCCAAACTAAAGCAAAAGAACCTCGAGCCGGCTTTA  228

Query  206  GAAGACACCCTCGATGATTGCTCTAAGAATTACTTGGACGCGGTCGCGCAGCTCGACGAT  265
            |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct  229  GAAGACACCCTCGACGATTGCTCTAAGAATTACTTAGATGCGGTCGCGCAGCTCGACGAT  288

Query  266  TCTCTAGCCGCTTTGATGCAAAACTCGTTCATCGACGTCGATATTTGGCTCAATACGGCC  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || 
Sbjct  289  TCTCTAGCCGCTTTGATGCAAAACTCGTTCATCGACGTCGATATTTGGCTCAACACCGCG  348

Query  326  ATTAGCGACGGCGAGGCTTGTGAAACCGCTTTGAACGATCGTGCCGGTAACGATGCTGAG  385
            || |||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  349  ATAAGCGACGGTGAGGCTTGTGAAAACGCTTTGAACGATCGTGCCGGTAATGATGCTGAG  408

Query  386  CTTGCTCGTAGGAACACAAACTTGTTGAAGCTTTGCAAGGACGCTCTTCTCATTAACACT  445
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  409  CTTGCTCGTAGGAACACAAACTTGTTGAAGCTTTGCAAGGATGCTCTTCTCATTAACACT  468

Query  446  ATTTTAACTCCCTAA  460
            |||||||||||||||
Sbjct  469  ATTTTAACTCCCTAA  483


 Score =  119 bits (64),  Expect = 3e-26
 Identities = 67/68 (99%), Gaps = 1/68 (1%)
 Strand=Plus/Plus

Query  23  ATGAAAATGGCCGGAAGGATCTTTCTCCTTTTCCTCTCCGTCTACGTCACGGTGGCCATC  82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1   ATGAAAATGGCCGGAAGGATCTTTCTCCTTTTCCTCTCCGTCTACGTCACGGTGGCCATC  60

Query  83  GCCG-CAA  89
           |||| |||
Sbjct  61  GCCGACAA  68



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22856536885


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5