BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943522

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   597    2e-170


> AT4G02140.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion; EXPRESSED IN: 13 plant structures; 
EXPRESSED DURING: 4 anthesis, F mature embryo stage, 
petal differentiation and expansion stage, D bilateral stage; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT1G02700.1); Has 19 Blast hits to 19 proteins in 5 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants 
- 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr4:949460-951063 REVERSE LENGTH=902
Length=902

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 366/386 (95%), Gaps = 5/386 (1%)
 Strand=Plus/Plus

Query  1    CAACAACAACAACATAGCCAGATATAATGCGGTATTCACCAGCTTTTGCTGCAGCACGTT  60
            ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  188  CAAGAACAACAACATAGCCAGATATAATGCTGTCTTCACCAGCTTTTGCTGCAGCACGTT  247

Query  61   CTACTCTCGTTCGTCGTCTTCCTGCGAAGAGACTAGCTTC-T-T-CTGGGCGAACCGCTG  117
            ||||||||| ||||||||||| ||||||||||||| |||| | | |||| ||||||||||
Sbjct  248  CTACTCTCGGTCGTCGTCTTCATGCGAAGAGACTATCTTCTTCTACTGGTCGAACCGCTG  307

Query  118  ATCCAGAGATTCATGCTCGTAACGATGGAGACGAGCCTGGTCTTTTTCCATCAGACCCCG  177
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  308  ATCCAGAGATTCATGCCCGTAACGATGGAGACGAGCCTAGTCTTTTTCCATCAGACCCCG  367

Query  178  AAGGTTTGGATGATGTAGCGAATCCGAAGACTCCAGCCGATGAGGATGTACCGGATATTC  237
            | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  368  AGGGTTTGGATGATGTAGCGAACCCGAAGACTCCAGCGGATGAGGATGTACCGGATATTC  427

Query  238  GACCACCCGGTTTTGTAAAGGAACCGCTTTCGCCGCCAAAAAAT-CCACGAGATACTTCA  296
            ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||
Sbjct  428  GACCACCCGGTTTTGTAAAGGAACCGCTTTCTCCGCCAAAAAATCCCA-GAGATACTTCA  486

Query  297  CACAAGCTTGAATCTACTCCTGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA  356
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  487  CACAAGCTTGAATCTACTCCCGTTGGTCTACCTGCAGATCTCAATTTCCAACAGAAACGA  546

Query  357  AATTAATTGCAGCAAACGCCTTAGCC  382
            ||||||| ||||||||||||||||||
Sbjct  547  AATTAATAGCAGCAAACGCCTTAGCC  572



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5