BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943524
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02120.1 | Symbols: | CTP synthase family protein | chr4:94... 2835 0.0
AT4G20320.1 | Symbols: | CTP synthase family protein | chr4:10... 294 2e-78
> AT4G02120.1 | Symbols: | CTP synthase family protein | chr4:940778-944291
FORWARD LENGTH=1960
Length=1960
Score = 2835 bits (1535), Expect = 0.0
Identities = 1644/1698 (97%), Gaps = 2/1698 (0%)
Strand=Plus/Plus
Query 18 GAGATGAAGTACGTATTGGTGACTGGAGGAGTGGTTAGTGGGCTTGGCAAAGGCGTTACC 77
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 93 GAGATGAAGTACGTATTGGTGACTGGAGGAGTGGTGAGTGGGCTTGGCAAAGGCGTTACG 152
Query 78 GCCAGTAGTATCGGCGTCGTGCTTAAAGCTTGTGGCCTTCGAGTTACCTCCATTAAAATT 137
|| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 153 GCGAGTAGTATCGGCGTGGTGCTTAAAGCTTGTGGCCTTGGAGTTACCTCCATTAAAATT 212
Query 138 GATCCTTATTTGAACACTGATGCTGGTACTATGTCCCCTTTTGAGCATGGAGAGGTTTTT 197
||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 213 GATCCATATCTGAACACTGATGCTGGTACAATGTCCCCTTTTGAGCATGGAGAGGTTTTT 272
Query 198 GTACTCGATGATGGTGGAGAGGTTGATCTTGATTTGGGGAACTACGAAAGATTTCTCGAT 257
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 273 GTACTCGATGATGGTGGAGAGGTTGATCTTGATTTGGGAAACTACGAAAGATTTCTCGAT 332
Query 258 GTGACACTAACCAAAGACAACAACATAACCACTGGGAAGATATATCAGTCTGTCCTTGAG 317
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 333 GTGACACTAACCAAAGACAACAACATAACCACTGGGAAGATATATCAGTCTGTTCTTGAC 392
Query 318 AAGGAACGGAAAGGCGACTATCTTGGGAAGACTGTTCAGGTTGTTCCACACATTACTGAT 377
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 393 AAGGAACGGAAAGGCGACTACCTTGGGAAGACTGTTCAGGTTGTTCCACACATTACTGAT 452
Query 378 GCAATCAAGGATTGGATTGAGTCAGTTTCTCTGATTCCTGTGGATGGAATGGAAGGCCAA 437
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 453 GCAATCAAGGATTGGATTGAGTCAGTCTCTCTGATTCCTGTGGATGGAAAGGAAGGCCAA 512
Query 438 GCTGATGTTTGTGTTATTGAGTTGGGCGGGACTGTTGGTGACATCGAATCAATGCCTTTT 497
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 513 GCTGATGTTTGTGTTATTGAGTTGGGAGGGACTGTTGGTGACATCGAGTCAATGCCTTTT 572
Query 498 ATCGAGGCCTTGAGACAATTGTCATTCTCAGTTGGACCGGAAAATTTCTGCCTGATTCAC 557
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 573 ATCGAGGCCTTGAGACAATTGTCATTCTCTGTTGGACCGGATAATTTCTGCCTGATTCAC 632
Query 558 GTGAGCTTGATTCCCGTTCTGGGTGTTGTTGGGGAGCAGAAAACAAAGCCAACCCAACAC 617
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 633 GTGAGCTTGATTCCCGTTCTTGGTGTTGTTGGGGAGCAGAAAACAAAGCCAACCCAACAC 692
Query 618 AGTGTCCGAGAACTAAGAGCTTTGGGATTGACTCCTCACTTTTTGGCATGTCGCTCTGCT 677
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ACTGTCCGAGAACTAAGAGCTTTGGGATTGACTCCTCACTTTTTGGCATGTCGCTCTGCT 752
Query 678 CAGCCACTACTGGAAAGTACCAAGGCAAAATTGTCTCAGTTTTGTCATGTGTCGGCAGCT 737
|||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 753 CAGCCACTGCTGGAAAGTACCAAGGCTAAATTGTCTCAGTTCTGTCATGTGGCGGCAGCT 812
Query 738 AATATTCTCAATATCCATGATGTTCCAAACATTTGGCATGTTCCTCTCCTACTCCGTAAT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AATATTCTCAATATCCATGATGTTCCAAACATTTGGCATGTTCCTCTCCTACTCCGTAAT 872
Query 798 CAAAACGCTCATCACTCGATTCTCAAACAACTGAATCTAACTAGCGTTG-GAACAGCACC 856
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 873 CAAAACGCTCATCACTCGATTCTCAAACAACTGAATCTAACTAACGTTGCGA-CAGCACC 931
Query 857 TGATCTGGATAGCTGGACTAGGATGGCTGAGACTTTTGATAACTTGACAAATCATGTAAA 916
||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
Sbjct 932 TGATCTGGATAGCTGGAATAAGATGGCTGAAACTTTTGATAACTTGACAAATCATGTCCA 991
Query 917 AATTGCTATGGTTGGAAAGTACATTGGTCTAACCGATTCTTATCTATCGGTTGTTAAGGC 976
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 992 AATTGCTATGGTTGGAAAGTACATTGGTCTAACGGATTCTTATCTCTCGGTTGTGAAGGC 1051
Query 977 CCTTCTTCATGCCTGCATTGCATGTTCATTGAAGCCACATATCGAATGGATTGCAGCTTC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1052 CCTTCTTCATGCCTGCATTGCATGTTCATTGAAGCCACATATCGAATGGATCGCAGCTTC 1111
Query 1037 AGATCTTGAAGACGAAAGTGAGAAATCGACTCCGGAGGCACATGCTGCTGCTTGGAACAT 1096
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1112 AGATCTTGAAGACGAAAGTGAGAAATCGACTCCGGAGGCGCATGCTGCTGCTTGGAAGAT 1171
Query 1097 CTTGAAGAGCGCAGAATGCATTCTGGTTCCTGGTGGTTTTGGAGATCGTGGCGTGAGCGG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1172 CTTGAAGAGCGCAGAATGCATTCTGGTTCCTGGTGGTTTTGGAGATCGTGGTGTGAGTGG 1231
Query 1157 AATGGTTTTAGCAGCCAAATACGCTAGAGAGAACAAAATTCCTTATCTTGGGATCTGCTT 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AATGGTTTTAGCAGCCAAATACGCTAGAGAGAACAAAATTCCTTATCTTGGGATCTGCTT 1291
Query 1217 GGGGATGCAAATTGCAGTAATTGAGTTTGCCAGATCTGTTTTGGGTTTGGAAAGAGCAAA 1276
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1292 GGGGATGCAAATTGCAGTAATTGAGTTTGCAAGATCTGTTTTGGGTTTGGAAAGAGCAAA 1351
Query 1277 TAGCACCGAGTTCGATGCTCAGACATCTGACCCTGTTGTTATTTTTATGCCAGAAGGCTC 1336
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1352 TAGCACTGAGTTCGATGCTCAGACATCTGACCCTGTTGTTATATTTATGCCAGAAGGCTC 1411
Query 1337 AAGAACACATATGGGAAGCACAATGAGACTTGGATCCCGAAGAACACATTTACAGAACCG 1396
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1412 AAGAACACATATGGGAAGCACAATGAGACTTGGATCCCGAAGAACACATTTACACAACCG 1471
Query 1397 AGACTCTCTCACTTCAAAACTATACGGCGAAGTTAGTTATGTAGACGAAAGGCATAGGCA 1456
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1472 AGACTCTCTCACTTCAAAACTATACGGCCAAGTTTCTTATGTAGACGAAAGGCATAGGCA 1531
Query 1457 CCGTTACGAGGTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGT 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 CCGTTACGAGGTGAATCCAGAAGTAGCTCAAGCACTTGAAGAAGCTGGTTTAAGATTTGT 1591
Query 1517 GGGTAAAGATGATACAGGGAAACGAGTCGAGGTGATTGAGTTTCAAGATCATCCATTCTA 1576
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1592 GGGTAAAGATGATACAGGGAAACGTGTTGAGGTGATTGAGTTTCAAGATCATCCATTCTA 1651
Query 1577 TGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCTACTAGACCTTCTCCTCTGTT 1636
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1652 TGTTGGAGTTCAGTTTCATCCAGAATTTAAGTCAAGACCCACTAGACCTTCTCCTCTGTT 1711
Query 1637 TTTAGGGTTTATATTGGCTGCGAGGAAGCTTCTTCAGGCCCATTTTAGCAATTGAGTCGA 1696
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1712 TTTAGGGTTTATATTGGCTGCGAGGAAGCTTCTTCAAGCCCATTTAAGCAATTGAGTCGA 1771
Query 1697 AGAAGCTCGAGCTCTTTC 1714
||||||||| |||||||
Sbjct 1772 TGAAGCTCGACCTCTTTC 1789
> AT4G20320.1 | Symbols: | CTP synthase family protein | chr4:10974579-10979464
FORWARD LENGTH=2347
Length=2347
Score = 294 bits (159), Expect = 2e-78
Identities = 494/649 (76%), Gaps = 49/649 (8%)
Strand=Plus/Plus
Query 19 AGATGAAGTACGT-ATTGGTGACTGGAGGAGTGGTTAGTGGGCTTGGCAAAGGCGTTACC 77
|||||||||| || || || | |||||||| || ||||| || |||||||| || ||
Sbjct 86 AGATGAAGTATGTGGTT-GTTTCAGGAGGAGTAGTGAGTGGACTCGGCAAAGGAGTCACG 144
Query 78 GCCAGTAGTATCGG-CGTCGTGCTTAAAGCTTGTGGCCTT-CGAGTTACCTCCATTAAAA 135
|| ||||| ||||| | || | || ||| | ||||| ||| ||||| ||| |||||||||
Sbjct 145 GCAAGTAGCATCGGAC-TCATCCTCAAATCCTGTGG-CTTCCGAGTCACCGCCATTAAAA 202
Query 136 TTGATCCTTATTTGAACACTGATGCTGGTACTATGTCCCCTTTTGAGCATGGAGAGGTTT 195
| |||||||| || |||| ||||||||| || ||||| ||| |||| ||||| || ||||
Sbjct 203 TCGATCCTTACTTAAACATTGATGCTGGGACCATGTCACCTATTGAACATGGTGAAGTTT 262
Query 196 TTGTAC-TCGATGATGGTGGAGAGGTTGATCTTGAT-TTGGGGAACTACGAAAGATTTC- 252
|| | | ||||||||||| ||||||||||| ||| || |||||||| || || |||
Sbjct 263 ACGT-CTTGGATGATGGTGGCGAGGTTGATCTGGATCTT-GGGAACTATGAGAG-GTTCA 319
Query 253 TCGATGTGACA-CTAACCAAAGACAACAACATAACCACTGGGAAGA-TATATCAGTC-TG 309
| ||| | | | || || | || ||||||||||| ||| |||| | | ||| || | ||
Sbjct 320 TGGATATTA-AGCTGACTAGTGAAAACAACATAACTACT-GGAAAAGTTTATAAG-CATG 376
Query 310 TCCTTGAGAAGGA-ACGGAAAGGCGACTATCTTGGGAAGACTGTTCAGGTTGTTCCACAC 368
| |||||||| || | ||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct 377 TGCTTGAGAAAGAGA-GGAGAGGAGATTATCTTGGGAAGACTGTTCAGGTTGTTCCTCAT 435
Query 369 ATTACTGATGCAAT-CAAGGATTGGATTGAGTCAGTTTCT-CT-G-ATTCCTGTGGATGG 424
||||||||||| || ||| || |||||||| | || | || | ||||| ||||||||
Sbjct 436 ATTACTGATGCTATTCAAAAAT-GGATTGAG-C-GTG-CAGCTAGGATTCCAGTGGATGG 491
Query 425 A-ATGGAAGG-CCAAGCTGATGTTTGTGTTATTGAG-TTGGGCGGGACTGTTGGTGACAT 481
| | | ||| ||| |||||||||||||| || || |||| || ||| | || || ||
Sbjct 492 ACA-GTCAGGTCCA-GCTGATGTTTGTGTCATAGAACTTGGA-GGAACTATAGGAGATAT 548
Query 482 CGAATCAATGCCTTTTATCGAGGC-CTTGAGACAATTGTCAT-TCTCAGTTGG-ACCGGA 538
|| || ||||||||||| || || |||| | || || |||| || | || || || | |
Sbjct 549 AGAGTCCATGCCTTTTATTGAAGCTCTTGGG-CAGTTCTCATATCGC-GTGGGCACTG-A 605
Query 539 AAATTTCTGCCTGATTCACGTGAG-CTTGATTCCCGT-TCTGGGTGTTGTTGGGGAGCAG 596
||||| ||| |||| || || || |||| | || || | || ||||||||| || |||
Sbjct 606 CAATTTTTGCTTGATCCATGTCAGTCTTG-TGCCTGTAT-TGAATGTTGTTGGTGAACAG 663
Query 597 AAAAC-AAAGCCAACCCAACACAGTGTCCGAGAACT-AAGAG-CTTTGG 642
|| || ||| ||||| ||||| || || |||| || ||||| | ||||
Sbjct 664 AAGACTAAA-CCAACTCAACATAGCGTTAGAGA-CTTAAGAGGCCTTGG 710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84738519960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5