BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943525
Length=203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16540.1 | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybde... 106 9e-23
AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily p... 86.1 1e-16
> AT1G16540.1 | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybdenum
cofactor sulfurase (LOS5) (ABA3) | chr1:5659415-5665449
FORWARD LENGTH=2758
Length=2758
Score = 106 bits (57), Expect = 9e-23
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 76 CTTCAGGCTTTACAACATGGAAACGGGGCTGGTGTATGTGTTCTGTATGGCAGTGAAAAT 135
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1143 CTTCAGGCTTTACGACATGGAAACGGGGCTGCTGTATGTGTTCTGTATGGCAGTGAAAAT 1202
Query 136 CTG 138
|||
Sbjct 1203 CTG 1205
> AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:5670577-5673600 REVERSE LENGTH=1729
Length=1729
Score = 86.1 bits (46), Expect = 1e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 1 CCATGGTAGGGATGTGGATCGATGGGTGATTTAGAACAGCTTCATGGGGTAT 52
|||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 236 CCATGGTATGGATGTGGATTGATGGGTGATTTAGAACAGCTTCATGGGGTAT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9054243180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5