BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943526
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily p... 588 2e-167
> AT1G16570.2 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr1:5670577-5673600 REVERSE LENGTH=1729
Length=1729
Score = 588 bits (318), Expect = 2e-167
Identities = 390/423 (92%), Gaps = 11/423 (3%)
Strand=Plus/Plus
Query 1 AGGCATTTATTCAGCTTACAATGCTTCTCTGGTTTCTTTTCGTAAAAGTACCAGCGCCTG 60
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 AGGCATTTATTCAGTTTACAATGCTTCTCTGGTTTCTTTTCGTTAAAGTACCAGCGCCTG 356
Query 61 ACACTTTCTTGGTCCAGAATCCTCCTTCCGTTCCAACCCTAATTGCTGTTAAGTGGGCGA 120
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 357 ACATTTTCTTGGTCCAGAATCCTCCTTCCGTCCCAACTCTAATTGCTGTTAAGTGGGCGA 416
Query 121 GTTCATGGAGACTTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACATTGTTGG 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 GTTCATGGAGACGTGCAGCGTTTGTTGTAGATTGGCATAATTTTGGATATACGTTGTTGG 476
Query 181 CATTGTCTTTAGGAAGAAACAATATGTTTGTATCCTTATACCGCTGGTATG-GCTTGATA 239
||||||||||||||||||||||| || ||||||||||||||||||||| || | | ||
Sbjct 477 CATTGTCTTTAGGAAGAAACAATTTGCTTGTATCCTTATACCGCTGGTCTGAGAATCATT 536
Query 240 ATGGGAAAGATGGCAACAGGTTCACTA------A-AA--GCAATGCAACATGAACTGGAT 290
|||| |||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 537 ATGG-AAAGATGGCAACAGGTTCGCTATGTGTCACAAAAGCAATGCAACATGAACTGGAT 595
Query 291 CAGAATTGGGGAGTGAGAGCCCAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCATCCC 350
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 596 CAGAATTGGGGTGTGAGAGCCAAAGTGTTATATGATCAGCCTCCTGAGTTTTTCCGTCCC 655
Query 351 GCTTTACTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAAAAATGATCTTTGCCATCCA 410
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 656 GCTTTGCTTGAAGAAAGGCATGAGTTGTTTTGCCGAGTGAGGAAGGATCTTTGCCATCCA 715
Query 411 ATT 413
|||
Sbjct 716 ATT 718
Score = 169 bits (91), Expect = 4e-41
Identities = 104/110 (95%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 509 AGAGTTGGAAAACCAAGAGCTTAATGAAACCCTTTTTACTACCAAAATTTA-TACTGACA 567
|||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct 742 AGAGTTGGAAAACCAAGAGCTTAATGAAACCCTTTTTACTACCAAA-TTTAATGCTGACA 800
Query 568 TCTCCCTGAAGCAAAACAGACCAGCTCTTGTTCTGAGCAGTACAAGCTGG 617
|||| ||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 801 TCTCGCTGAAGCAAAACAGACCAGCTCTTGTTGTGAGTAGTACAAGCTGG 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5