BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943527

Length=930
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16540.1 | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybde...   610    7e-174


> AT1G16540.1 | Symbols: SIR3, LOS5, ABA3, ATABA3, ACI2 | molybdenum 
cofactor sulfurase (LOS5) (ABA3) | chr1:5659415-5665449 
FORWARD LENGTH=2758
Length=2758

 Score =  610 bits (330),  Expect = 7e-174
 Identities = 361/376 (96%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  54   GTCAAAGTGATATCAGTTCGGCAACCAGTGACCTTATAGCGGATGCTCGGCATCAGGTGC  113
            |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct  256  GTCAAAGTGATATCAGTTCGGCCACCAGTGACCTTATAGCGGATGCTCGACATCAGGTGC  315

Query  114  TTGAATACTTCAATGCATCTCCTGAAGATTACAGTTGCATATTCACCTCCGGAGCCACAG  173
            |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  316  TTGAATACTTTAATGCATCTCCTGAAGATTACAGTTGCTTATTCACCTCCGGAGCCACAG  375

Query  174  CAGCGCTGAAGCTTGTTGGAGAGACATTTCCTTGGACCCAAGACCGTAATTTTTTGTATA  233
            |||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||||
Sbjct  376  CAGCGCTGAAGCTTGTCGGAGAGACTTTTCCGTGGACCCAAGACAGTAATTTTTTGTATA  435

Query  234  CCATGGAGAATCACAACAGTGTGCTTGGTATTAGGGAATATGCATTAGCTCAAGGTGCTT  293
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  436  CCATGGAGAATCACAACAGTGTACTTGGTATTAGGGAATATGCATTAGCTCAAGGTGCTT  495

Query  294  CAGCATGTGCAGTGGATACTGAAGAGGTAGCTAACCAACCAGGCCAGCTCACAAATTCAG  353
            |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct  496  CAGCATGTGCAGTGGATATTGAAGAGGCAGCTAACCAACCAGGCCAGCTTACAAATTCAG  555

Query  354  GACCATCTATCAAGGTAAAGCATCGTGCTGTGCAGATGAGAAACACTTCTAAAATCCAAA  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  556  GACCATCTATCAAGGTAAAGCATCGTGCTGTGCAGATGAGAAACACTTCTAAACTCCAAA  615

Query  414  AGGAAGA-TCCAAGAG  428
            ||||||| || |||||
Sbjct  616  AGGAAGAGTC-AAGAG  630


 Score =  455 bits (246),  Expect = 4e-127
 Identities = 246/246 (100%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  662   AAGTTATTTGGTTATCCTACTGGGCTTGGCGCTCTCCTTGTACGGAATGATGCAGCCAAA  721
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  861   AAGTTATTTGGTTATCCTACTGGGCTTGGCGCTCTCCTTGTACGGAATGATGCAGCCAAA  920

Query  722   TTGCTCAAAAAGACTTATTTTAGTGGAGGCACTGTTGCTGCTTCAATTGCTGACATCGAC  781
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  921   TTGCTCAAAAAGACTTATTTTAGTGGAGGCACTGTTGCTGCTTCAATTGCTGACATCGAC  980

Query  782   TTTGTAAAAAGAAGGGAAAGGGTGGAGGAGTTTTTTGAGGATGGTTCTGCTTCATTCCTG  841
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  981   TTTGTAAAAAGAAGGGAAAGGGTGGAGGAGTTTTTTGAGGATGGTTCTGCTTCATTCCTG  1040

Query  842   AGCATAGCAGCCATCCGTCATGGCTTCAAATTACTCAAGTCGCTTACACCTTCTGCAATT  901
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1041  AGCATAGCAGCCATCCGTCATGGCTTCAAATTACTCAAGTCGCTTACACCTTCTGCAATT  1100

Query  902   TGGATG  907
             ||||||
Sbjct  1101  TGGATG  1106


 Score =  265 bits (143),  Expect = 7e-70
 Identities = 163/173 (94%), Gaps = 0/173 (0%)
 Strand=Plus/Plus

Query  427  AGATCTGGTGAAGTTGATTAAAGAAAATCCTGAAACCATGCTACAAGGCTCTCCCTTTAG  486
            |||||||||||||||||| ||||||||| |||| ||| ||||||||||||| ||||||||
Sbjct  695  AGATCTGGTGAAGTTGATGAAAGAAAATACTGAGACCGTGCTACAAGGCTCCCCCTTTAG  754

Query  487  CAAGAGCAACCGGTGGATGGTCTTGATTGATGCTGCAAAGGGTTGTGCTACACTACCACC  546
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  755  CAAGAGCAAGCGGTGGATGGTCTTGATTGATGCTGCAAAGGGTTGTGCTACACTACCACC  814

Query  547  TGATTTATTGAAGTATCCTGCAGATTTTGTTGTTGTGTCATTCTACAAGGTAT  599
            |||||||| | ||||||||||||||||||||||| |||||||||||||| |||
Sbjct  815  TGATTTATCGGAGTATCCTGCAGATTTTGTTGTTCTGTCATTCTACAAGTTAT  867



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45461903035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5