BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943533
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02080.1 | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretio... 952 0.0
AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B |... 531 4e-150
> AT4G02080.1 | Symbols: ASAR1, ATSARA1C, ATSAR2, SAR2 | secretion-associated
RAS super family 2 | chr4:921454-922777 FORWARD
LENGTH=912
Length=912
Score = 952 bits (515), Expect = 0.0
Identities = 583/616 (95%), Gaps = 4/616 (1%)
Strand=Plus/Plus
Query 3 GGATCTGAGTAGTGAGTGATGTTCTTGGTAGATTGGTTCTATGGCGTACTCGCTTCGTTA 62
|||||||||| | ||| |||||| || | ||||||||||||||||| ||||||||||||
Sbjct 86 GGATCTGAGT--T-AGTCATGTTCATGATCGATTGGTTCTATGGCGTTCTCGCTTCGTTA 142
Query 63 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTTGGACTCGATAATGCTGGTAAAACC 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 143 GGGTTATGGCAGAAAGAGGCTAAGATCTTGTTTCTGGGACTCGATAATGCTGGTAAAACC 202
Query 123 ACTTTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCAACGCAGCATCCA 182
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 203 ACTCTGCTTCACATGTTGAAAGACGAGAGATTGGTACAGCATCAGCCTACGCAGCATCCA 262
Query 183 ACGTCTGAAGAACTTAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAT 242
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 ACTTCTGAAGAACTCAGCATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCAC 322
Query 243 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 CAGATTGCTCGCAGGGTCTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTA 382
Query 303 GTAGATGCTTATGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGACGCACTTCTC 362
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 383 GTTGATGCTTACGACAAAGAGAGATTTGCAGAATCAAAAAAGGAACTTGATGCACTTCTC 442
Query 363 TCAGACGAATCCCTAGCCAACGTCCCATTCCTCATTCTAGGAAACAAAATAGACATACCT 422
||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||
Sbjct 443 TCAGACGAATCCCTAGCCAGCGTTCCATTCCTCATTCTAGGAAACAAGATAGACATACCG 502
Query 423 TACGCTGCATCAGAAGACGAGCTCCGTTACCATCTCGGACTCTCCAACTTCACAACAGGA 482
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 503 TATGCTGCATCAGAGGACGAGCTCCGTTACCATCTCGGCCTCTCCAACTTCACTACAGGA 562
Query 483 AAGGGTAAAGTGAATCTAACGGATTCGAACGTAAGGCCATTGGAGGTTTTCATGTGCAGC 542
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 563 AAGGGTAAAGTGAATCTAACGGATTCGAACGTTAGGCCATTGGAGGTTTTCATGTGCAGC 622
Query 543 ATTGTCAGGAAAATGGGTTATGGCGAAGGCTTCAAATGGCTTTCTCAATACATCAAGTAA 602
|||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 623 ATTGTCAGGAAAATGGGTTACGGAGAAGGTTTCAAATGGGTTTCTCAATACATCAAGTAA 682
Query 603 GACGA-CACAAGCTGT 617
||| | |||| |||||
Sbjct 683 GACAAACACACGCTGT 698
> AT1G56330.1 | Symbols: SAR1, ATSAR1, ATSARA1B, ATSAR1B, SAR1B
| secretion-associated RAS 1B | chr1:21086555-21088549 REVERSE
LENGTH=943
Length=943
Score = 531 bits (287), Expect = 4e-150
Identities = 508/613 (83%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 21 ATGTTCTTGGTAGATTGGTTCTATGGCGTAC-TCGCTTCGTTAGGGTTATGGCAGAAAGA 79
||||||||| | ||||||||||| || | | | |||||||||||||||||||| |||||
Sbjct 72 ATGTTCTTGTTCGATTGGTTCTACGGAAT-CTTAGCTTCGTTAGGGTTATGGCAAAAAGA 130
Query 80 GGCTAAGATCTTGTTTCTTGGACTCGATAATGCTGGTAAAACCACTTTGCTTCACATGTT 139
|| |||||||||||||| || |||||||||||||| ||||| || || ||||||||| |
Sbjct 131 AGCAAAGATCTTGTTTCTCGGTCTCGATAATGCTGGCAAAACTACATTACTTCACATGCT 190
Query 140 GAAAGACGAGAGATTGGTACAGCATCAGCCAACGCAGCATCCAACGTCTGAAGAACTTAG 199
|||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 191 CAAAGACGAGAGATTAGTTCAGCATCAGCCGACGCAACATCCAACGTCTGAAGAACTTAG 250
Query 200 CATTGGGAAAATCAAGTTTAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGCAGGGT 259
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 251 CATTGGAAAAATCAAGTTCAAGGCTTTTGATTTGGGTGGTCATCAGATTGCTCGTAGGGT 310
Query 260 CTGGAAGGATTACTATGCTAAGGTGGACGCTGTGGTCTACCTAGTAGATGCTTATGACAA 319
||||| ||||||||||| ||||| || ||||| |||||||| || ||||||||||||||
Sbjct 311 TTGGAAAGATTACTATGCCAAGGTTGATGCTGTTGTCTACCTTGTGGATGCTTATGACAA 370
Query 320 AGAGAGATTTGCAGAATCAAAAA-AGGAACTTGACGCACTTCTCTCAGACGAATCCCTAG 378
||| ||||||||||| ||||||| || | ||||| || |||||||| || ||| |||| |
Sbjct 371 AGAAAGATTTGCAGAGTCAAAAAGAG-AGCTTGATGCTCTTCTCTCGGATGAAGCCCTTG 429
Query 379 CCAAC-GTCCCATTCCTCATTCTAGGAAACAAAATAGACATACCTTACGCTGCATCAGAA 437
| ||| ||||| || || ||||| || ||||| || || || ||||| || || || |||
Sbjct 430 C-AACTGTCCCGTTTCTGATTCTTGGGAACAAGATTGATATCCCTTATGCAGCTTCTGAA 488
Query 438 GACGAGCTCCGTTACCATCTCGGACTCTC-C-AACTTCACAACAGGAAAGGGTAAAGTGA 495
||||| || | || || || || |||| | |||||||| || || ||||| |||||||
Sbjct 489 GACGAACTGAGGTATCA-CTTGGG-TCTCACTAACTTCACCACCGGTAAGGGCAAAGTGA 546
Query 496 ATCTAACGGAT--TC-GAACGTAAGGCCA-TTGGAGGTTTTCATGTGCAGCATTGTCAGG 551
|| |||| || | || | ||| ||| |||| |||||||||||||||||| |
Sbjct 547 CGCT--CGGAGACTCTGGT-GTTCGCCCACTTG-AGGTCTTCATGTGCAGCATTGTCCGT 602
Query 552 AAAATGGGTTATGGCGAAGGCTTCAAATGGCTTTCTCAATACATCAAGTAA-GAC-GACA 609
||||||||||||||||| || ||||||||||| ||||| |||||||| ||| ||| |||
Sbjct 603 AAAATGGGTTATGGCGAGGGATTCAAATGGCTCTCTCAGTACATCAACTAAAGACAGACG 662
Query 610 -CAAG-CTGTTAT 620
|||| || ||||
Sbjct 663 TCAAGTCTTTTAT 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5