BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943539
Length=2385
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02030.2 | Symbols: | Vps51/Vps67 family (components of ves... 3711 0.0
> AT4G02030.2 | Symbols: | Vps51/Vps67 family (components of vesicular
transport) protein | chr4:892176-897318 FORWARD LENGTH=2647
Length=2647
Score = 3711 bits (2009), Expect = 0.0
Identities = 2133/2194 (97%), Gaps = 3/2194 (0%)
Strand=Plus/Plus
Query 193 GATTAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGAT 252
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 GATCAAAAAGTCGAATTTGGAGGTGCTTCTGCAAAGACATGTTCAAATGGCTGCTGAGAT 391
Query 253 TAAAAATCTCGATACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAG 312
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TAAAAATCTCGACACAGACTTGCAAATGCTAGTCTATGAAAATTACAACAAGTTTATCAG 451
Query 313 TGCAACAGATACCATCAAAAGGATGAAGAGTAATATTTTTGGAATGGAAGGCAATATGGA 372
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 452 TGCAACAGATACAATCAAAAGGATGAAGAGTAATATTTTCGGGATGGAAGGCAATATGGA 511
Query 373 CCAGCTTCTTCAGAAGATAATGTCAGTGCAATCAAGGAGTGATGGGGTTAACACTTCTCT 432
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct 512 CCAGCTTCTTCAGAAGATAATGTCAGTACAATCAAAGAGTGATGGGGTCAACACTTCTCT 571
Query 433 TTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGT 631
Query 493 TCAGTTCATCTATGATTTACCTGCAAGACTGCAAAAATGCATCAAATCAGAAGCCTATGG 552
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 632 TCAGTTCATCTATGATTTACCTGCAAGACTGCAAAAATGTATCAAGTCAGAAGCCTATGG 691
Query 553 AGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGGTATATGGCGATACATC 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 CGATGCTGTCAGGTTCTATACTGGAGCAATGCCAATTCTCAAGGTATATGGCGATACATC 751
Query 613 ATTCCAAGACTGCAGACGAGCTTCCGAAGAAGCTATAGAAATCATCATAAAGAACTTGCA 672
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 752 ATTCCAAGACTGCAGGCGAGCTTCCGAAGAAGCTATAGAAATTATCATAAAGAACTTGCA 811
Query 673 GACGAAGCTATTTTCAGATTCAGAATCCATACAGGCGAGAGCTGAAGCTGCAGTGCTTCT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GACGAAGCTATTTTCAGATTCAGAATCCATACAGGCGAGAGCTGAAGCTGCAGTGCTTCT 871
Query 733 TAAGCAGTTAGATGTCCCTGTTGATAGCTTAAAGGCTAAACTGTTGGAAAAACTGGAACA 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 TAAGCAGTTAGATGTCCCTGTTGATAGCTTAAAGGCTAAACTGTTGGAAAAACTGGAACA 931
Query 793 ATCTCTTGATGGTCTGCAAATAAAGCCTGAGGAGGCAAGTAAACTTGTAGAGCACGATGA 852
|||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 932 GTCTCTTGATGGTCTTCAAATAAAGCCTGAGGAGGCAAGTACACTTGTAGAGGACGATGA 991
Query 853 TTCATCTAACGATACAGAAAGCAATGACCAACATCTTGCTAAAATCCATGAGGATGCTGT 912
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 992 TTCATCTAACGATACAGAAAGCAATGACCAACATCCTGCTAAAATTCATGAGGATGCCGT 1051
Query 913 ACGTGGATTTTCTGAGGCCATGCGTGCTTACCGAGAGATATTCCCTGACTCAGAAGAAAG 972
||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 1052 ACGTGGATTTTCTGAGGCCATACGTGCTTATCGAGAAATATTCCCCGACTCAGAAGAAAG 1111
Query 973 ACTTTTCAAACTCGCGAGAGCCTTAACAGCAATGCACTTTGAGAACATGGAGCTATATAT 1032
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1112 ACTTTTCAAACTCGCGAGAGCCTTAACAGCAATGCACTTTGAGTACATGGAGCTATATAT 1171
Query 1033 AAGAAAACGGGTTTCTGCAGCAGATTTTCTTGGAATTTTTCGAATTATATGGGAAGATGT 1092
|| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1172 AAAAAAACGGGTTTCTGCAGCAGATTTTCTAGGAATTTTTCGAATTGTATGGGAAGATGT 1231
Query 1093 GGTACTTATGGACGAGGTGCTACCTGAGGCTGCACTCTCTGATTTATCTGCAGAGGCTGC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 GGTACTTATGGACGAGGTGCTACCTGAGGCTGCACTCTCTGATTTATCTGCAGAGGCTGC 1291
Query 1153 CCAGGTTACTCTTAAGCAATTTGTTGCGAGGACGTTTTCTCATCTTCAACAGGATATATC 1212
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1292 CCAGGTTACTCTTAAGCAATTTGTTGCGAGAATGTTTTCTCATCTTCAACAGGATATATC 1351
Query 1213 AGATACTCTCTTGAAATTCGATATCAACCAAAAGGAAGCAGTTGAGGGGGAAATCTTGAA 1272
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1352 AGATACTCTCTTGAAATTCGATATCAACCAAAAGGAAGCAGTTGAAGGGGAACTCTTGAA 1411
Query 1273 GGTTATCCTGGAAGCTAGCCAAAAAGCAGTGCTACAAGGCACCACAAATATATTCCAGGA 1332
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1412 GGTTGTCCTGGAAGCTAGCCAAAAAGCAGTGCTACAAGGCACCACAAATATATTTCAGGA 1471
Query 1333 CTTCCGTCAGCTTCTTGATGAAAACGCTGGAATATTTATAAAGATGAGGGATTTAATCAA 1392
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1472 CTTCCGTCAGCTTCTTGATGAAAAAACTGGAATATTTATAAAGATGAAGGATTTAATCAG 1531
Query 1393 TAGTTGGATTCAGAAAGGATTTCAAGACTTCTTCAGGTCACTAGAAGCTCAATTTCTAGT 1452
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TGGTTGGATTCAGAAAGGATCTCAAGACTTCTTCAGGTCACTAGAAGCTCAATTTCTAGT 1591
Query 1453 GCTTTCTGGAAAAACTAGCTCATCAAACGATATAGAGGGAAAATCGAGTGACAAAATTCA 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 GCTTTCTGGAAAAACTAGCTCATCAAACGATATAGAGGGAAAATCGAGTGACAAAATTCA 1651
Query 1513 TGCTGGTCTCATCCTTGTATTGGCGCAGCTCTCTGTATTCATCGAACAAAAGGTCATCCC 1572
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1652 TGCTGGTCTCATTCTTGTATTGGCGCAGCTCTCTGTCTTCATCGAACAAAAGGTCATCCC 1711
Query 1573 GAGAGTTACTGAGGAAATAGCTGCTTCCTTCTCTGGTGGAAATTCCCAAGCCTTTGAGAA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 GAGAGTTACTGAGGAAATAGCTGCTTCCTTCTCTGGTGGAAATTCCCAAGCCTTTGAGAA 1771
Query 1633 TGGACCTGCTTTTATTCCTGGAGAACTTTGCCGGGTCTTCCACGCAGCCAGCGAGAAACT 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TGGACCTGCTTTTATTCCTGGAGAACTTTGCCGGGTCTTCCACGCAGCCAGCGAGAAACT 1831
Query 1693 TCTCCAGCATTACATAGACACAAGAACACAGAAGGTATCGGTTTTGCTGAGAAAAAGGTT 1752
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1832 TCTCCAGCATTACATAGACACAAGAACACAGAAGGTATCAGTTTTACTGAGAAAAAGGTT 1891
Query 1753 CAAGACACCAAACTGGGTTAAGCACAAGGAGCCACGAGAGGTTCACATGTATGTCGATAT 1812
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 CAAGACACCTAACTGGGTTAAGCACAAGGAGCCACGAGAGGTTCACATGTATGTCGATAT 1951
Query 1813 GTTTCTTCACGAGTTAGAAGAAGTTGGTAAAGAAGTGAAACAAGTTTTACCTCAAGGGAC 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GTTTCTTCACGAGTTAGAAGAAGTTGGTAAAGAAGTGAAACAAGTTTTACCTCAAGGGAC 2011
Query 1873 ATTTC-GTAAGCACAAAAGAACAGACAGCAACGGAAGTAACACTACAACCTCATCACGAA 1931
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 -TTTCCGTAAGCACAAAAGAACAGACAGCAACGGAAGTAACACTACAACCTCATCACGAA 2070
Query 1932 GCAATACACTCCATAGCGATAAGATGACACGGTCAAATTCACAAAGAGCTCGTAGTCAGC 1991
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2071 GCAATACCCTCCATAATGATAAGATGGCACGGTCAAATTCACAAAGAGCTCGTAGTCAGC 2130
Query 1992 TTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAAAGTAGAAATATTCACCAAGGTTG 2051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 TTTTCGAGACACATCTTGCAAAACTGTTCAAGCAAAAAGTAGAAATATTCACCAAGGTTG 2190
Query 2052 AATTTACACAGGAATCCGTTGTTACAACAACGGTAAAACTCTGTCTGAAGAGTTTGCAAG 2111
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2191 AATTTACCCAGGAATCCGTTGTTACAACAACAGTAAAACTTTGTCTGAAGAGTTTGCAAG 2250
Query 2112 AATATGTCCGGCTCCAAACTTTTAACCGGAGCGGGTTCCAGCAGATTCAGCTAGACATTC 2171
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2251 AATATGTCCGTCTCCAAACGTTTAACCGGAGCGGGTTCCAGCAGATTCAGCTAGACATTC 2310
Query 2172 AGTTCTTAAAAGCTCCTTTGAAGGAAACAGTTGAGGACGAAGCTGCAATTGACTTCTTGC 2231
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2311 AGTTCTTAAAAGCTCCATTGAAGGAAGCAGTTGAGGACGAAGCTGCAATAGACTTCTTGC 2370
Query 2232 TCGACGAGGTGATCGTTGCGGCTTCGGAGAGATGTCTTGATGTGATTCCATTGGAGCCAC 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 TCGACGAGGTGATCGTTGCGGCTTCGGAGAGATGTCTTGATGTGATTCCATTGGAGCCAC 2430
Query 2292 CGATCTTGGACAAACTCATACAAGCTAAACTCGCTAAATCAAAGGAGCACAACAACAACA 2351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CGATCTTGGACAAACTCATACAAGCTAAACTCGCTAAATCAAAGGAGCACAACAACAACA 2490
Query 2352 CAGTTTCTTCTTAAAAGTTGTCATAACTCAGAAC 2385
||||||||||||||||||| |||||||||| |||
Sbjct 2491 CAGTTTCTTCTTAAAAGTTTTCATAACTCA-AAC 2523
Score = 302 bits (163), Expect = 1e-80
Identities = 186/197 (94%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 1 AGAAGAAGCAGGA-ATaaaaaaaaTGGCGACGGAGGCAGCTCCGATGGACGAAAAGGCGA 59
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AGAAGAAGCAGGAGTTTAGAAAAATGGCGACGGAGGCAGCTCCGATGGACGAAAAGGCGA 123
Query 60 AGAGAATGAGAGATCTATTGTCGAGCTTCTACGCTCCGGATCCTTCAATCTCGACGAGTA 119
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 124 AGAGAATGAGAGATCTATTGTCGAGCTTCTACGCACCGGATCCTTCAATCTCGACGAGTG 183
Query 120 ATTCCTCGATCAACGCTTCTTTCGATAACATCAACAGCACTTCATTCGATGCTGATCAGT 179
|||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 184 GTTCCTCCATCAACGCCTCTTTCGATAACATCAACAGCACTTCCTTTGATGCTGATCAGT 243
Query 180 ACATGGATCTCATGATT 196
|||||||||||||||||
Sbjct 244 ACATGGATCTCATGATT 260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118423085655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5