BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943541
Length=2583
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02020.1 | Symbols: EZA1, SWN, SDG10 | SET domain-containing... 3768 0.0
> AT4G02020.1 | Symbols: EZA1, SWN, SDG10 | SET domain-containing
protein | chr4:886600-891955 FORWARD LENGTH=2876
Length=2876
Score = 3768 bits (2040), Expect = 0.0
Identities = 2429/2612 (93%), Gaps = 46/2612 (2%)
Strand=Plus/Plus
Query 1 GGAAAGATCGAGGAGTCATCAATGGTGACGGATGATAGCGACTCCTCTGGAAGAATCAAG 60
|||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||
Sbjct 73 GGAAAGCTCGAGGAGTCATCAATGGTGACGGACGATAGCAACTCCTCTGGACGAATCAAG 132
Query 61 TCTCA--T-G-T-A-GATGATGA---T------GAAGAAGATAGGCTCGAGGGTTTGGAG 105
||||| | | | | |||||||| | ||||||||||| ||||||||||||||
Sbjct 133 TCTCATGTAGATGATGATGATGATGGTGAAGAAGAAGAAGATAGACTCGAGGGTTTGGAA 192
Query 106 AACAGACTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAG 165
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 AACAGATTAAGTGAGCTTAAAAGGAAAATTCAAGGAGAAAGAGTTAGGTCTATTAAAGAG 252
Query 166 AAAATTGAGGCTAATAGAAAGAAAGTGGATGTTCATGTTTCTCCCTTTTCATCTGCTGCA 225
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 253 AAATTTGAGGCTAATAGAAAGAAAGTGGATGCTCATGTTTCTCCCTTTTCATCTGCTGCA 312
Query 226 TCGAGCCGGGCTACCGCAGGGGAGAATGGAAATAGCAATGTGTTTTCTTCGAGAATGGA- 284
|||||||| |||||||||| ||| ||||||||||||||| || ||||||||||||| ||
Sbjct 313 TCGAGCCGAGCTACCGCAGAGGATAATGGAAATAGCAATATGCTTTCTTCGAGAAT-GAG 371
Query 285 AATACCACTCTGCAAGTTAAATGGTTTTTCTCATGGGGTGGGAGATAGAGACTATGTTCC 344
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 372 AATGCCACTCTGCAAGTTAAATGGTTTTTCTCATGGTGTGGGAGATAGAGACTATGTTCC 431
Query 345 TACTAAGGATGTTACAGCAGCAAGTGTCAAGCTTCCGATTGCTGAGAGAATACCGCCTTA 404
|||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 432 TACTAAGGATGTTATATCAGCAAGTGTCAAGCTTCCTATTGCTGAGAGAATACCGCCATA 491
Query 405 CACTACCTGGATATTTCTGGACAGAAATCAAAGAATGGCGGAAGATCAGTCTGTGGTTGG 464
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 492 CACTACCTGGATATTTTTGGACAGAAATCAAAGAATGGCTGAAGATCAGTCTGTGGTTGG 551
Query 465 TCGAAGACAAATTTACTATG-AGAGACATGGTGGTGAGACACTGATATGCAGCGATAGTG 523
|||||||||||| ||||||| | | ||||||||||||||| || ||||||||||||||||
Sbjct 552 TCGAAGACAAATCTACTATGAACA-ACATGGTGGTGAGACGCTAATATGCAGCGATAGTG 610
Query 524 AGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATATTCCGAGGGTGAAGACTCTGTTA 583
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||
Sbjct 611 AGGAAGAACCAGAACCTGAGGAGGAAAAACGTGAATTTTCCGAGGGTGAAGATTCCATTA 670
Query 584 TATGGTTGATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATTCTCTTTGCCAGT 643
||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 671 TATGGTTAATTGGGCAGGAGTATGGCATGGGTGAGGAAGTGCAGGATGCCCTTTGCCAGT 730
Query 644 TTCTCAGCGTAGATGCTTCAGACATTCTGGGAAGATACAATGAACTCAAGTTGAAGGATG 703
| || |||||||||||||| || || |||| |||||||||||| |||||||||||||||
Sbjct 731 TGCTAAGCGTAGATGCTTCTGATATCCTGGAAAGATACAATGAGCTCAAGTTGAAGGATA 790
Query 704 AGCAGAATACTGAGGACTTTTCTAATTCCGGATTCAAGCTTGGAATATCTCTGGAAAAGG 763
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 791 AGCAGAATACCGAGGAATTTTCTAATTCCGGATTCAAGCTGGGAATATCTCTGGAAAAGG 850
Query 764 ACCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGTTGCTTGGTATTTG 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GCCTTGGTGCAGCTCTAGATTCTTTTGATAATCTTTTCTGCCGCCGTTGCTTGGTATTTG 910
Query 824 ACTGTCGTCTGCATGGATGTTCTCAGCCTTTAATTAGTGCTAGTGAAAAACAGCCTTATT 883
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 911 ACTGTCGTCTGCATGGATGTTCTCAGCCTTTGATTAGTGCTAGTGAAAAACAGCCTTATT 970
Query 884 GGTCTGATTATGAAGGTGATAGGAAGCCCTGCAGCAATCATTGTTACCTCCAGGT---TG 940
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| | |
Sbjct 971 GGTCTGATTATGAAGGTGATAGGAAACCCTGCAGCAAACATTGTTACCTCCAGCTCAAGG 1030
Query 941 AGGTCA-AG--G---C-G-GTCA-G-AG-AA----GTACCTAAAGCAGAAGAGAAAGCTT 985
||||| || | | | || | || || | | |||||||||||||||||||||
Sbjct 1031 CGGTCAGAGAAGTACCAGAAACATGCAGTAATTTTGCATCTAAAGCAGAAGAGAAAGCTT 1090
Query 986 CAAAAGAGGAATGCAGCAAGGCTATCTCCTCAGATG-ACCCTCATGATGCTGCTACTGGT 1044
|| |||||||||||||||||||| ||||||| |||| ||| |||| |||||||| ||||
Sbjct 1091 CAGAAGAGGAATGCAGCAAGGCTGTCTCCTCTGATGTTCCC-CATGCTGCTGCTAGTGGT 1149
Query 1045 GTCAATCTGCAAGTTGAGAAGACTGATATTGGTTTCAAGAATTTAGATTCATCCTCTGGT 1104
|||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1150 GTCAGTCTGCAAGTTGAGAAGACTGATATTGGTATCAAGAATGTAGATTCATCCTCTGGT 1209
Query 1105 GTAGAACAAGAGCATGGAATTAGGGGAAAGCGTGAGGTCCCGAA-TCTCGAAGACTCCAA 1163
||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1210 GTAGAACAAGAGCATGGAATTAGAGGAAAGCGTGAGGTCCC-AATTCTAAAAGACTCCAA 1268
Query 1164 TGATCTGCCTAATTTATCAAACAAGAAACAGAAGACCACAGCCTCAGATACAAAAATGTC 1223
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1269 TGATCTGCCTAATTTATCGAACAAGAAACAGAAGACCGCAGCCTCAGATACAAAAATGTC 1328
Query 1224 ACTTGTTAATTCTACCCCTAGCTTAGATCAGGCATTTGATAGCTCAAAGGGTGATCAAAG 1283
| ||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |
Sbjct 1329 ATTTGTTAATTCTGTCCCTAGCTTAGATCAGGCATTGGATAGCACAAAGGGTGATCAAGG 1388
Query 1284 TGAAACAGTTGAGACCAATAATGTAAACAGAGACTCAGGAGCTGATTCAAAACAAGTAGC 1343
|| |||| | || |||||| |||||||||||||||| ||||||| ||||| ||||||
Sbjct 1389 TGGAACAACT--GA-CAATAAAGTAAACAGAGACTCAGAAGCTGATGCAAAAGAAGTAGG 1445
Query 1344 TGAACCTCTTCCAGACATTTTGGTCCATGATGGTGGTTCCTCCGTTTGTCAGCCAGACCA 1403
||| ||| ||||||||| || ||||||||||||||||||||| ||||||||||| ||||
Sbjct 1446 TGAGCCTATTCCAGACAATTCGGTCCATGATGGTGGTTCCTCAATTTGTCAGCCACACCA 1505
Query 1404 TGGTAGTGGAAATGGATCAATAATCGTTGGAGAAATGTCTGAGAAAATTCAACCATCTAC 1463
|||||||||||| ||| |||||||| ||| |||||||||||||| || || |||||||||
Sbjct 1506 TGGTAGTGGAAACGGAGCAATAATCATTGCAGAAATGTCTGAGACAAGTCGACCATCTAC 1565
Query 1464 AGAGTGGAACCCTATCGAGAAGGATCTTTACTTAAAGGGAGTCGAAATCTTTGGGAGAAA 1523
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1566 AGAGTGGAATCCTATCGAGAAGGATCTTTACTTGAAGGGAGTCGAAATCTTTGGAAGAAA 1625
Query 1524 CAGCTGTCTTATTGCAAGAAACCTACTTTCTGGCCTGAAGTCATGCCTAGATGTGTCCAG 1583
|||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||
Sbjct 1626 CAGCTGTCTTATTGCAAGAAACCTGCTTTCTGGCTTGAAGACATGCCTAGATGTGTCCAA 1685
Query 1584 TTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGCACCCCAAATTTGCTGTT 1643
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1686 TTACATGCGTGAAAACGAAGTTTCAGTTTTTCGAAGATCTAGTACCCCAAATTTGCTGTT 1745
Query 1644 GGATGATGGCAGGACTGACCCAGGGAATGATGATGATGAGGTGCCTCCAAGGACAAGATT 1703
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1746 GGATGATGGCAGGACTGACCCAGGGAATGATAATGATGAGGTGCCTCCAAGGACAAGATT 1805
Query 1704 GTTCCGTAGAAAAGGTAAAACTCGAAAGCTAAAATACTCTACAAAGTCTGCTGGTCATCC 1763
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1806 GTTCCGTAGAAAAGGCAAAACCCGGAAGCTAAAATACTCTACAAAGTCTGCTGGTCATCC 1865
Query 1764 ATCTGTCTGGAAAAGAATAGCCGGTGGCAAAAACCAGTCCTGTAAACAATACACACCATG 1823
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1866 GTCTGTCTGGAAAAGAATAGCTGGTGGCAAAAACCAGTCCTGTAAACAATACACGCCGTG 1925
Query 1824 TGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACCAATGAAACTTGTTGCGA 1883
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1926 TGGATGCCTGTCAATGTGCGGAAAGGATTGCCCTTGTCTAACTAATGAAACTTGCTGCGA 1985
Query 1884 GAAATATTGCGGGTGCTCAAAAAGCTGCAAAAATCGCTTCCGAGGATGTCATTGTGCAAA 1943
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1986 GAAATATTGCGGGTGCTCAAAAAGCTGTAAAAATCGTTTCCGAGGATGTCATTGTGCAAA 2045
Query 1944 GAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGA 2003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 GAGTCAATGCAGAAGTAGGCAGTGTCCCTGCTTTGCTGCTGGCAGAGAATGTGATCCAGA 2105
Query 2004 TGTTTGCAGAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGCGAAGCACCAAGACG 2063
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2106 TGTTTGCAGAAATTGCTGGGTTAGTTGTGGAGATGGTTCTCTCGGTGAAGCACCAAGACG 2165
Query 2064 CGGAGAAGGGCAATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATACTATT 2123
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2166 CGGAGAAGGGCAATGCGGAAACATGAGACTTCTCCTGAGGCAACAACAGAGGATCCTATT 2225
Query 2124 GGGAAAGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGA 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 GGGAAAGTCTGATGTTGCTGGATGGGGTGCTTTTCTAAAGAACTCGGTCAGCAAAAATGA 2285
Query 2184 GTATCTCGGAGAATACACTGGCGAATTGATCTCACACCGCGAGGCGGATAAGCGTGGGAA 2243
|| || ||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 2286 ATACCTTGGAGAATACACCGGTGAATTGATCTCACACCATGAGGCGGATAAGCGTGGGAA 2345
Query 2244 AATATATGACCGGGCAAATTCGTCCTTCCTTTTTGACTTGAATGATCAGTACGTCCTCGA 2303
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2346 AATATATGACCGGGCAAATTCGTCCTTCCTCTTTGACTTGAATGATCAGTACGTCCTCGA 2405
Query 2304 TGCTCAACGCAAAGGAGACAAGCTGAAATTTGCCAATCACTCGGCAAAACCCAATTGCTA 2363
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2406 TGCTCAACGCAAAGGTGACAAGCTGAAATTTGCCAATCACTCAGCTAAACCCAATTGCTA 2465
Query 2364 TGCTAAGGTGATGTTTGTAGCAGGAGATCACAGGGTCGGCATTTTTGCAAACGAACGAAT 2423
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2466 CGCTAAGGTGATGTTTGTAGCAGGAGATCACAGGGTCGGGATTTTTGCAAACGAACGAAT 2525
Query 2424 AGAAGCTAGCGAGGAGCTTTTCTATGACTACAGATATGGACCAGACCAAGCACCAGCT-T 2482
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 2526 AGAAGCTAGCGAAGAGCTTTTCTATGACTATAGATATGGACCAGACCAAGCACCAG-TGT 2584
Query 2483 GGGCTCGCAAACCTGAAGGCTCCAAGAAAGATGATTCAGCCATTACTCATCGTAGAGCCA 2542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2585 GGGCTCGCAAACCTGAAGGCTCCAAGAAAGATGATTCAGCCATTACTCATCGTAGAGCCA 2644
Query 2543 GAAAGCATCAATCTCATTGATCATTGCTGGCT 2574
||||||| ||||||||||||| ||| ||||||
Sbjct 2645 GAAAGCACCAATCTCATTGATGATTACTGGCT 2676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128226706308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5