BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943542
Length=2218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02010.1 | Symbols: | Protein kinase superfamily protein | ... 3661 0.0
> AT4G02010.1 | Symbols: | Protein kinase superfamily protein
| chr4:881090-885399 FORWARD LENGTH=2722
Length=2722
Score = 3661 bits (1982), Expect = 0.0
Identities = 2140/2218 (96%), Gaps = 4/2218 (0%)
Strand=Plus/Plus
Query 3 CAAGAGAAAGTGTCGGTGATGTCTATTTTCTCACTCGCGAGCTCTTCTGGTTCGCAAAGA 62
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 350 CAAGAGAAAGTGTCGGTGATGTCGATTTTCTCACTCGCGAGCTCTTCTGATTCACAAAGA 409
Query 63 GAT-ATCCTGATAATGGCGTTGAAGGCAGTGCTTTTTGTATATTGTGTGGTTTCTCTCGT 121
||| | ||| ||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 410 GATGA-CCTAATAATGGCGTTGAAGGCGGTGGTTATTGTATATTGTGTGGTTTCTCTCGT 468
Query 122 CAGTGTTCTGTTAGCTGATGCTCAACATGAAGGACTGCCAATTTCACCAACGTTATCACC 181
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 CAGTGTTCAATTAGCTGATGCTCAACATGAAGGACTGCCAGTTTCACCAACGTTATCACC 528
Query 182 TTCAACTTCACCAGCTATCTCTGATCTGCCCCTACCAGCTGAATTTCCGCGGTTTCACAG 241
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TTCAACTTCACCAGTTATCACTGATCTGCCCCTACCAGCTGAATTTCCGCGGTTTCACAG 588
Query 242 AAAATATTTCGCACCGCAACAAACAGAAACACCGGAGCATCCTCCTTCCTT-TAGCCGTT 300
||| ||||||||||| |||||| ||||| |||| ||||| |||| |||| ||| ||||
Sbjct 589 AAAGTATTTCGCACCACAACAAGCAGAAGCACCTCAGCATTCTCC-CCCTTATAGTCGTT 647
Query 301 TGGTCGCTTCTGTTCATCCCCCTACCAACTCACATTTCTCCAAACCTTCCATGAAAAAGA 360
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 648 TGGTCGCTTCTGATCATCCCCCTACCAGCTCACATTTCTCCAAACCTTCCATGAAAAGGA 707
Query 361 ATGCTCAGTCTCCTGGAGCCGGCTTGGTTGATATTGCTCCAGCACAATCTAGCAATGGTG 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 ATGCTCAGTCTCCTGGAGCCGGCTTGGCTGATATTGCTCCAGCACAATCTAGCAATGGTG 767
Query 421 CACTTCCTGATGCCTTAACTCAGCCACCTTTGTCCCCCTCCATTTCAAATTGTTGCAAAG 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 768 TTCTTCCTGATGCCTTAACTCAGCCACCTTTGTCGCCCTCCATTTCAAATTGTTGCAAAT 827
Query 481 CAGATATGGTGCTTAAACGAAGAAGTATTGGTTGCCACTGTGTGTATCCTATAAAGCTGG 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 828 CAGATATGGTGCTTAAACGAAGAAGTATTGGTTGCCACTGCGTGTATCCTATAAAACTGG 887
Query 541 ACATCCTTCTCTTGAATGTTTCAGAAACTCCTAGTTGGAACATGTTCTTGAACGAATTTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ACATCCTTCTCTTGAATGTTTCAGAAACTCCTAGTTGGAACATGTTCTTGAACGAATTTG 947
Query 601 CTACCCAGCTTGGCCTCCTACCTCACCAAATCGAGCTGATTAACTTCTATGTGCTAAGCT 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 CTACCCAGCTTGGTCTCCTACCTCACCAAATCGAGCTGATTAACTTCTATGTGCTAAGCT 1007
Query 661 TATCAAGGATGAACATATCGATGGATATCACCCCTCATTCTGGAATTAGTTTTTCAGCGA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1008 TATCAAGGATGAACATATCGATGGATATCACCCCTCATTCTGGAATTAGTTTCTCAGCTA 1067
Query 721 GTCAGGCATCAGCAATAAACTCTTCGCTTATCAGCCACAAGATTCAGTTTAGCCCTACTT 780
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1068 GTCAGGCATCCGCAATAAACTCTTCCCTTATCAGCCACAAGATTCAATTTAGCCCTACTT 1127
Query 781 TGGTGGGAGATTACAAACTTCTAAACCTTACTTGGTTTGAGGCCCCTGCACCTTCTCAAG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1128 TGGTGGGAGATTACAAACTTCTAAACCTTACTTGGTTTGAGGCCCCTGCACCTTCGCAAG 1187
Query 841 CACCTCTAGTGGCTTCTTCACCTCATAAAGCACCATCACAAGGATCCTCAGCATCTACGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1188 CACCTCTAGTGGCTTCTTCACCTCATAAAGCACCATCACAAGGATCCTCAGCAACTACGT 1247
Query 901 CAGTAAGATCTCCAGGGAAAAAGAAGCATCCCAATCTTATTCTTATCTTTGCTATAGCCG 960
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1248 CAGTAAGATCTCCAGGGAAAAAGAGGCATCCCAATCTTATTCTTATCTTTTCTATAGCCG 1307
Query 961 CTGGTGTGCTTATACTTGCCATAATCACTGTACTTGTTATTTGTTCCTGCGCACTCCGAG 1020
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1308 CTGGTGTGCTTATACTTGCCATAATCACTGTACTTGTTATTTGTTCCCGCGCACTCCGAG 1367
Query 1021 AAGAGAAAGCTCCTGATCCACACAAAGAAACTGTAAAACCAAGGAACCTGGACGCTGGTT 1080
||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1368 AAGAGAAAGCTCCAGATCCTCACAAAGAAGCTGTAAAACCAAGGAACCTGGACGCTGGTT 1427
Query 1081 CAGTTGGGGGATCTCTTCCTCACCCAGCAAGTACACGGTTTCTGTCATATGAAGAACTCA 1140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CATTTGGGGGATCTCTTCCTCACCCAGCAAGTACACGGTTTCTGTCATATGAAGAACTCA 1487
Query 1141 AGGAGGCAACTAGCAATTTTGAATCTGCTAGCATTCTAGGGGAAGGTGGGTTTGGCAAGG 1200
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1488 AAGAGGCAACTAGCAATTTTGAATCTGCTAGCATTCTAGGAGAAGGTGGGTTTGGCAAGG 1547
Query 1201 TATACAGAGGCATCTTAGCCGATGGTACTGCTGTAGCGATTAAGAAGCTAACAAGTGGAG 1260
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1548 TTTACAGAGGCATCTTAGCCGATGGTACTGCTGTAGCGATTAAGAAGCTCACAAGTGGTG 1607
Query 1261 GGCCACAAGGCGATAAAGAATTCCAGGTGGAGATTGATATGCTAAGCCGTCTTCATCATC 1320
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1608 GGCCACAAGGTGATAAAGAATTCCAGGTGGAGATTGATATGCTTAGCCGTCTTCATCATC 1667
Query 1321 GTAATCTTGTGAAACTTGTGGGTTACTATAGTAGTCGAGATTCTTCTCAGCACCTACTTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GTAATCTTGTGAAACTTGTGGGTTACTATAGTAGTCGAGATTCTTCTCAGCACCTACTTT 1727
Query 1381 GTTATGAGCTTGTTCCAAATGGCAGCCTCGAGGCTTGGCTCCATGGGCCTCTAGGGTTGA 1440
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1728 GTTATGAGCTTGTTCCAAATGGCAGCCTCGAGGCTTGGCTCCATGGGCCTCTCGGGTTGA 1787
Query 1441 ACTGTCCTCTTGATTGGGACACCAGAATGAAGATTGCACTTGATGCTGCAAGAGGACTTG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 ACTGTCCTCTTGATTGGGACACCAGAATGAAGATTGCACTTGATGCTGCAAGAGGACTTG 1847
Query 1501 CATACCTTCATGAAGACTCACAACCGTCGGTTATACACAGAGATTTTAAAGCCTCTAATA 1560
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1848 CATACCTTCATGAAGACTCGCAACCCTCCGTTATACACAGAGATTTTAAAGCCTCTAATA 1907
Query 1561 TACTCCTTGAAAACAACTTCAACGCCAAAGTTGCAGATTTTGGCCTAGCCAAACAAGCTC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TACTCCTTGAAAACAACTTCAACGCCAAAGTTGCAGATTTTGGCCTAGCCAAACAAGCTC 1967
Query 1621 CTGAAGGCAGGGGTAATCACTTATCCACCCGTGTTATGGGCACATTTGGGTATGTAGCGC 1680
||||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 1968 CTGAAGGCAGGGGTAATCACTTATCTACTCGTGTTATGGGCACATTTGGATATGTTGCGC 2027
Query 1681 CTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTAG 1740
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2028 CTGAATATGCAATGACGGGACACCTACTCGTCAAGAGTGATGTTTATAGTTACGGTGTGG 2087
Query 1741 TCCTTCTCGAGTTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAG 1800
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2088 TCCTTCTCGAATTGTTAACTGGTAGAAAACCTGTGGATATGTCACAACCTTCAGGCCAAG 2147
Query 1801 AAAATCTCGTCACTTGGACAAGGCCAATTCTAAGAGACAAAGACCGGTTAGAAGAACTAG 1860
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2148 AAAATCTCGTCACTTGGACAAGGCCAGTTTTAAGAGACAAAGACCGGTTAGAAGAACTAG 2207
Query 1861 TCGATTCAAGGCTCGAAGGAAAATACCCAAAAGAAGATTTCATAAGAGTCTGTACAATCG 1920
|||||||||| || |||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 2208 TCGATTCAAGACTTGAAGGAAAATACCCGAAAGAAGATTTCATAAGAGTATGCACAATCG 2267
Query 1921 CTGCAGCTTGTGTTGCACCTGAAGCTAGCCAGAGACCAACGATGGGTGAAGTGGTTCAGT 1980
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2268 CTGCAGCTTGTGTTGCACCTGAAGCTAGCCAGAGACCAACGATGGGCGAAGTGGTTCAGT 2327
Query 1981 CACTTAAAATGGTTCAACGGGTGGTTGAGTATCAAGACCCGGTTTTAAACACTTCAAATA 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 CACTTAAAATGGTTCAACGGGTGGTTGAGTATCAAGACCCGGTTTTAAACACTTCAAATA 2387
Query 2041 AAGCTCGTCCTAACCGGAGACAATCATCAGCTACGTTCGAGTCAGAAGTAACATCTTCTA 2100
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2388 AAGCTCGTCCTAACCGGAGACAATCATCAGCTACGTTCGAGTCAGAAGTAACCTCTTCTA 2447
Query 2101 TGTTCTCTTCTGGTCCTTATTCTGGTCTAAGCGCTTTTGATCATGAGAATATTACACGAA 2160
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2448 TGTTCTCTTCTGGTCCTTATTCTGGTCTAAGCGCTTTTGATCATGAAAATATTACACGAA 2507
Query 2161 CAACTGTTTTCTCAGAAGATCTTCACGAAGGCCGATGATAGAAGCCATGGTTTTCTTC 2218
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2508 CAACTGTTTTCTCAGAAGATCTTCACGAAGGCCGATGATAGAAGCCAGGGTTTTCTTC 2565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110039594640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5