BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943543
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01995.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1234 0.0
> AT4G01995.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64680.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:873054-874772 FORWARD LENGTH=951
Length=951
Score = 1234 bits (668), Expect = 0.0
Identities = 781/833 (94%), Gaps = 17/833 (2%)
Strand=Plus/Plus
Query 3 AAAAACTTGGAAGGCCAGAAATGGCTATCCTTATCCATCTGCTTCTTCCTCCGACGACGA 62
||||||||| |||||||||||||||| | |||||||| | ||||||||||| ||||||
Sbjct 2 AAAAACTTGTAAGGCCAGAAATGGCTGTTCTTATCCAGGTTCTTCTTCCTCCTCCGACGA 61
Query 63 CTATCGTCTTCTCCAACTCATTTTCTACAAAGTTAATCCTACGAAGTCCTAATCACACGC 122
|||||||||||||||||||||||||||||||||||| | | | | |||||
Sbjct 62 CTATCGTCTTCTCCAACTCATTTTCTACAAAGTTAA---T----A---C---T--CACGC 106
Query 123 GGCGTGTGATTTGCCGTATCTCTGATTCTTCAGAGGTTAAATCAGATGAAGGAGCTTCGA 182
| ||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 107 GTCGTCTTCGTTGCCGTATCTCTAATTCGTCAGAGGTTAAATCAGATGAAGGAGCTCCGA 166
Query 183 AGTTGGAGTATAAGCCAGGACTTCTCGACGATTTCTTCATGCAATCGTTCCGGAACAAAT 242
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 167 AGTTGGAGTATAAGCCAGGACCTCTCGACGATTTCTTCATGCAATCGTTCCGGAACAAAT 226
Query 243 TGGTCGAGGAAGTCGGGTCGGATTCAGAGAAACCCGGGTACGTTGGACTTATTGAGTTGG 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TGGTCGAGGAAGTCGGGTCGGATTCAGAGAAACCCGGGTACGTTGGACTTATTGAGTTGG 286
Query 303 TGAAGCTTCTCTTGTTGAAAGGTCGTACTAGGTCGGAGACTAGTGATGCTGCGGTTCGAA 362
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 287 TTAAGCTTCTCTTGTTGAAAGGTCGTACTAGGTCGGAGACAAGTGATGCTGCGGTTCGAA 346
Query 363 TACTGAAGTCGTTGTTTCCTCCACTCATTTTAGAGCTTTACAAGCTTCTCATAGCTCCTA 422
||||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct 347 TACTGAAATCGTTGTTTCCTCCGCTAATTTTAGAGCTTTACAAGCTTCTCATTGCTCCTA 406
Query 423 TAGCACAAGGGAAATTAGCTGCTTTGATGGTTGCAAGAGTTACTGTACTTACCTGTCAAT 482
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 407 TAGCACAAGGAAAATTAGCTGCTTTGATGGTTGCAAGAGTTACTGTACTTACATGTCAAT 466
Query 483 GGCTCATGGGACCGAGCAAAGTAAACATCATCGATCTTCCTAATGGAGAATCTTGGGATA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 GGCTCATGGGACCGAGCAAAGTAAACATCATCGATCTTCCTAATGGAGAATCTTGGGATA 526
Query 543 GCGGGGTTTTCGTGGAGAAATGTCAGTATCTAGAAGAAAGCAAGTGTGTAGGAGTATGCA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GCGGGGTTTTCGTGGAGAAATGTCAGTATCTAGAAGAAAGCAAGTGTGTAGGAGTATGCA 586
Query 603 TTAATACATGTAAACTACCAACTCAGACATTTTTTAAAGACTACATGGGAGTTCCTTTGT 662
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 587 TTAATACATGTAAACTACCAACTCAGACATTCTTTAAAGACTACATGGGAGTTCCTTTGG 646
Query 663 TGATGGAACCAAACTTCAAAGATTATAGTTGCCAGTTTAAATTTGGAGTAGCTCCACCGG 722
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 647 TGATGGAACCAAACTTCAAAGATTATAGTTGCCAGTTCAAATTCGGAGTAGCTCCACCGG 706
Query 723 AGGATGATGGCAATGTTACTGAACCATGTTTTGAGACATGCTCAATCGCCGGCCGCCGGA 782
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 707 AGGATGATGGCAATGTTAATGAACCATGTTTTGAGACATGCTCAATCGCTGGCCGCCGGA 766
Query 783 AATTAAAATCTGGGGAGTGTCCTTTGGCGTAAATCTGTCGTTTGTT-TGTCCA 834
|||||||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct 767 AATTAAAATCCGGGGAGTGTCCTTTAGCGTAAATATATCGTTT-TTATGTCCA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5