BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943550
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01950.1 | Symbols: ATGPAT3, GPAT3 | glycerol-3-phosphate ac... 2573 0.0
AT1G02390.1 | Symbols: ATGPAT2, GPAT2 | glycerol-3-phosphate ac... 852 0.0
> AT4G01950.1 | Symbols: ATGPAT3, GPAT3 | glycerol-3-phosphate
acyltransferase 3 | chr4:844409-846787 REVERSE LENGTH=1828
Length=1828
Score = 2573 bits (1393), Expect = 0.0
Identities = 1541/1612 (96%), Gaps = 12/1612 (1%)
Strand=Plus/Plus
Query 1 AGCTTTCTGCAAAA-CCAAAAATGTCCGCTAAGATTTCAATATTCCAAGCTCTTGTCTTT 59
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 57 AGCTTTCTGCAAAATCCAAACATGTCCGCCAAGATTTCAATATTCCAAGCTCTTGTCTTT 116
Query 60 CTATTCTACCGGTTTATCCTCCGGCGATATCGGAACCCTAAACCAAAATACCAAAATGGC 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 117 CTATTCTACCGGTTTATCCTCCGGCGATATCGGAACTCTAAACCAAAATACCAAAATGGC 176
Query 120 CCTTCTTCTCTCCTCCAATCCGACCTATCACGCCACACATTGATCTTCAACGTAGAAGGA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CCTTCTTCTCTCCTCCAATCCGACCTATCACGCCACACATTGATCTTCAACGTAGAAGGA 236
Query 180 GCTCTTCTCAAATCCGACTCTCTCTTCCCTTACTTCATGTTAGTAGCATTCGAGGCGGGC 239
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 237 GCTCTTCTCAAATCCGACTCTCTCTTCCCTTACTTCATGTTAGTAGCATTTGAGGCGGGA 296
Query 240 GGGGTGACAAGGTCATTTATCCTCTTCATTCTCTATCCATTGATAAGCTTGATGAGCCAT 299
|| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGCGTAATAAGGTCATTTCTCCTCTTCATTCTCTATCCATTGATAAGCTTGATGAGCCAT 356
Query 300 GAGATGGGTGTCAAAGTGATGGTAATGGTGAGCTTCTTCGGGGTCAAAAAAGAAAGTTTT 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 357 GAGATGGGTGTCAAAGTGATGGTAATGGTGAGCTTCTTCGGGATCAAAAAAGAAGGTTTT 416
Query 360 AGAGCGGGGAGAGCGGTTTTACCTAAATACTTTCTAGAAGATGTCGGGCTCGAGATGTTC 419
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 417 CGAGCGGGGAGAGCGGTTTTGCCTAAATACTTTCTAGAAGATGTCGGACTCGAGATGTTC 476
Query 420 CAAGTGTTGAAGAGAGGAGGGAAGAGAATTGGAGTGAGTGATGATCTTCCTCAAGTTATG 479
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 477 GAAGTGTTGAAGAGAGGAGGGAAGAAAATCGGAGTGAGTGATGATCTTCCTCAAGTTATG 536
Query 480 ATCGAAGGGTTCTTGAAAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAAAAATGAAG 539
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 537 ATCGAAGGGTTCTTGAGAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAGAAATGAAA 596
Query 540 GTCGTTGGAGGTTATTATTTAGGGATCATGGAAGG-TAAAACCAAACATGATCTTGTCTT 598
|||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||||
Sbjct 597 GTCGTTGGAGGTTATTATCTAGGTATCATGGA-GGATAAAACCAAACATGATCTTGTCTT 655
Query 599 TGATGAGTTGGTTCGTAAAGAGAGACTAAACACCGGTCGTGTTATTGGCATCACTTCCTT 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGATGAGTTAGTTCGTAAAGAGAGACTAAACACCGGTCGTGTTATTGGCATCACTTCCTT 715
Query 659 CAATACATCTCTTCATCGATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCGTGAA 718
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAATACATCTCTTCACCGATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCGTGAA 775
Query 719 GAAATCAGACAAGCGAAGCTGGCAAACCCTACCACGAAGCCAATACCCTAAACCATTGAT 778
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 GAAATCAGACAAGCGAAGCTGGCAAACCCTACCACGAAGCCAGTACCCTAAACCATTGAT 835
Query 779 TTTCCACGATGGCCGTCTCGCAATCAAACCAACCCTAATGAACACTTTGGTCTTGTTCAT 838
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTTCCATGATGGCCGTCTCGCGATCAAACCAACCCTAATGAACACTTTGGTCTTGTTCAT 895
Query 839 GTGGGGTCCTTTCGCAGCAGCAGCCGCAGCAGCCAGACTCTTCGTCTCTCTTTGCATCCC 898
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GTGGGGTCCTTTCGCAGCCGCAGCCGCAGCAGCCAGACTCTTCGTCTCTCTTTGCATCCC 955
Query 899 TTACTCCTTCTCAATCCCGATCCTCTCCTTTTCCGGATGCAGACTAACCGTCACTAACGA 958
|||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 956 TTACTCTTTATCAATCCCGATCCTCGCCTTTTCCGGTTGCAGACTAACCGTCACTAACGA 1015
Query 959 CTACGTTTCATCTCAAAAACCAAAATCAAGTCAACGCAAAGGTTGTCTCTTTGTGTGTAA 1018
|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||
Sbjct 1016 CTACGTTTCATCTCAAAAACAAAAACCAAGTCAACGCAAAGGTTGTCTCTTTGTTTGTAA 1075
Query 1019 CCATAGGACTTTGTTGGACCCTCTCTATGTTGCATTCGCCTTGaaaaagaaaaacataaa 1078
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 1076 CCATAGGACTTTATTGGACCCTCTCTATGTTGCATTCGCTTTGAGAAAGAAAAACATCAA 1135
Query 1079 aaCTGTAACGTATAGTTTGAGTAGGGTATCCGAGATTCTGGCTCCGATCAAGACGGTGAG 1138
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1136 AACTGTAACGTATAGTTTGAGTAGGGTATCTGAGATTTTGGCTCCGATCAAGACGGTGAG 1195
Query 1139 ACTTACCCGTGATCGGGTGAGTGACGGTCAAGCCATGGAGAAATTGTTGACCGAAGGAGA 1198
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1196 ACTGACCCGTGATCGGGTGAGCGACGGTCAAGCCATGGAGAAATTGTTAACCGAAGGAGA 1255
Query 1199 TCTCGTGGTTTGTCCTGAAGGAACCACCTGTAGAGAACCTTACATGCTTAGGTTTAGCCC 1258
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1256 TCTCGTTGTTTGTCCTGAAGGAACCACTTGTAGAGAACCTTACCTGCTTAGGTTTAGCCC 1315
Query 1259 TTTGTTCACCGAGGTTAGTGACGTCATCGTTCCGGTGGCCGTGACG-TCAAACGTGACCT 1317
||||||||||||||||||||| ||||||||||| ||||| |||||| | | |||||||||
Sbjct 1316 TTTGTTCACCGAGGTTAGTGATGTCATCGTTCCCGTGGCTGTGACGGT-ACACGTGACCT 1374
Query 1318 TCTTCTATGGTACAACGGCAAGTGGTCTTAAGGC-CTTTGACCCGCTCTTCTTCCTCATG 1376
||||||| ||||||||||| |||||||||||||| ||| |||||||| ||||||||| ||
Sbjct 1375 TCTTCTACGGTACAACGGCGAGTGGTCTTAAGGCACTT-GACCCGCTTTTCTTCCTCTTG 1433
Query 1377 GATCCTTATCCTACCTACACCATCCAATTTCTCGACCCTGTCTCCGGTGCCACGTGCCAA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GATCCTTATCCTACCTACACCATCCAATTTCTCGACCCTGTCTCCGGTGCCACGTGCCAA 1493
Query 1437 GATCCTGATGGGAAGTTGAAGTTTGAGGTGGCCAATCA-TGTTCAGAGTGAGATTGGGAA 1495
||||||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 1494 GATCCTGATGGAAAGTTGAAGTTTGAGGTGGCCAA-CAATGTTCAGAGTGATATTGGGAA 1552
Query 1496 GGCGTTGGATTTCGAGTGCACAAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GGCGTTGGATTTCGAGTGCACAAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGG 1612
Query 1556 TAATAATGGAGTAGTTAAGAAAAATTAAAATT-GTTTTTAGGTTT-TGAGTG 1605
|||||||||||||||||||||||||||||||| ||||| ||| | ||||||
Sbjct 1613 TAATAATGGAGTAGTTAAGAAAAATTAAAATTTGTTTT-AGGATGATGAGTG 1663
> AT1G02390.1 | Symbols: ATGPAT2, GPAT2 | glycerol-3-phosphate
acyltransferase 2 | chr1:480852-483292 FORWARD LENGTH=1791
Length=1791
Score = 852 bits (461), Expect = 0.0
Identities = 1262/1631 (77%), Gaps = 125/1631 (8%)
Strand=Plus/Plus
Query 29 TAAGATTTC-AATATTCCAAGCTCTTGTCTTTC-TATTCTACCGG--TTT-ATCCTCCG- 82
|||||| || | | || |||||||||||| ||| | || |||||| ||| || |||||
Sbjct 81 TAAGATCTCGACTCTT-CAAGCTCTTGTC-TTCTTCTTGTACCGGTTTTTCATTCTCCGT 138
Query 83 -G--CG-AT-ATCGGAACCCTAAACCAAAATACC-AAAATGGCCCTTCT-TC--TCTCCT 133
| | | |||| | |||||||| |||||||| ||||| |||||||| | ||||
Sbjct 139 CGTTGGTGTCATCGTAGCCCTAAACAAAAATACCAAAAAT-GCCCTTCTCACGGCCTCCA 197
Query 134 CC-A-ATC-CGACCTATC-ACGCCACACATTGATCTTCAACGTAGAAGGAGCTCTTCTCA 189
|| | ||| |||||||| | ||||| ||||| |||||||| ||||||||||| ||||
Sbjct 198 CCAATATCAAGACCTATCGA-ATCACACTTTGATATTCAACGTCGAAGGAGCTCTACTCA 256
Query 190 AATCCGACTCTCTCTTCCCTTACTTCAT-GTTAGTAGCATTCGAGGCGGGCGGGGTGACA 248
|||| ||||| | |||||||||||||| ||| || |||||||| || || ||||||| |
Sbjct 257 AATCAAACTCTTTATTCCCTTACTTCATGGTT-GTGGCATTCGAAGCCGGAGGGGTGATA 315
Query 249 AGGTCA-TTTATCCTCTTCA-TTCTCTATCCATTGATAAGCTTGATGAGCCATGAGATGG 306
|||||| ||| ||||||| | |||| |||||||| ||||||||||||||| | || ||||
Sbjct 316 AGGTCACTTT-TCCTCTT-AGTTCTTTATCCATTTATAAGCTTGATGAGCTACGAAATGG 373
Query 307 GTGTCAAAG-TGATGGTAATGGTGAGCTTCTTCGGGGTCAAAAAAGAAAGTTTTAGAGCG 365
| | ||| |||||| ||| |||||||||| || || ||||| ||||| || ||| |
Sbjct 374 G-CTTGAAGACGATGGTGATGCTGAGCTTCTTTGGAGTTAAAAAGGAAAGCTTCCGAGTG 432
Query 366 GGGAGAGCGGTTTTACCTAAATACTTTCTAGAAGATGTCGGGCTCGAGATGTTCCAAGTG 425
|||| | | ||||| ||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 433 GGGAAATCAGTTTTGCCTAAGTATTTTCTAGAAGATGTTGGGCTCGAGATGTTCCAGGTT 492
Query 426 TTGAAGAGAGGAGGGAAGAGAATTGGAGTGAGTGATGATCTTCCTCAAGTTATGATCGAA 485
||||| |||||||| |||||| ||| ||||||||| | | || ||||||||||| ||
Sbjct 493 TTGAAAAGAGGAGGCAAGAGAGTTGCTGTGAGTGAT--T-TACCACAAGTTATGATTGAT 549
Query 486 GGGTTCTTGAAAGATTACTTGGAGATTGACGTTGTGGTCGGGAGAAAAATGAAGGTCGTT 545
| |||||| ||||||||||||||| || ||||||||||| ||| | ||||| | ||
Sbjct 550 GTATTCTTGCGAGATTACTTGGAGATAGAAGTTGTGGTCGGAAGAGACATGAAAATGGTC 609
Query 546 GGAGGTTATTATTTAGGGATCATGGAAGG-TAA-AACCAAACATGATCTTGTC-TTTGAT 602
|| ||||| || |||| ||| ||| ||| ||| || || | ||| ||| | ||||||
Sbjct 610 GGTGGTTACTACCTAGGCATCGTGG-AGGATAAGAA-GAACCTTGAAATTG-CTTTTGAT 666
Query 603 -GAGTTGGTTCGTA-AAGAGAGACTAAACACCGGTCGT-G--TTATTGGCATCACTTCCT 657
|| |||||| | |||| ||||| | |||||| | ||||||||||||||||||
Sbjct 667 AAAG-TGGTTC-AAGAAGAAAGACTTGGTAGTGGTCGTCGTCTTATTGGCATCACTTCCT 724
Query 658 TCAA-TACATCTCTTCATC-GATATCTATTCTCTCAGTTTTGCCAGGAAATTTATTTCGT 715
| || | | | ||| | ||| ||| |||||||| ||||||||||||||||| |||||
Sbjct 725 TTAACT-CGCCAAGTCA-CAGATCTCTCTTCTCTCAATTTTGCCAGGAAATTTACTTCGT 782
Query 716 GAAGAAA-TCAGACAAGCGAAGCTGGCAAACCCTACCACGAAG-CCAATACCCTAAACCA 773
||||| ||||||||| ||| |||||||||||||||| ||| |||||||||||||||
Sbjct 783 -CAGAAATTCAGACAAGAAAAGTTGGCAAACCCTACCAC-AAGATCAATACCCTAAACCA 840
Query 774 TTGATTTTCCACGATGGCCGTCTCGCAATCAAACCAAC-CCTAATGAACACTTTGGTCTT 832
||||||||||||||||| ||| | || | || ||||| ||| | ||||| | || ||
Sbjct 841 TTGATTTTCCACGATGGTCGTTTAGCCGTTAAGCCAACACCTT-TAAACACACTCGTATT 899
Query 833 GTTCATGTGGGGTCCTTTCGCAGCAG-C--AGCCGCAGCAGCCAGACTCTTCGTCT-CTC 888
|||||||||| || ||||| || | | |||||| ||| |||||| || || | |
Sbjct 900 ATTCATGTGGGCCCCATTCGCCGCCGTCTTAGCCGCTGCA---AGACTCGTCTTCGGC-C 955
Query 889 TTTGCATCCCTTACTCCTTCTC-AATCCCGATCCTCTCCTTTTCCGG-ATGCAGACTAAC 946
| | | ||||||||| | | |||||| ||||| |||||||||| || || || ||
Sbjct 956 TAAACTTACCTTACTCCCTAGCCAATCCCT-TCCTCGCCTTTTCCGGTATCCAC-CTTAC 1013
Query 947 -CGTCACTAACGACTACGTTTCATCTCAAAAACCAAA-ATCAAGTCAAC-GCAAA-G-G- 1000
| ||||| | || || || | || ||| || ||| | | || | ||| | |
Sbjct 1014 TC-TCACTGTCAACAAC----CA-C--AACGACCTAATATCC-GCCGACAGAAAAAGAGG 1064
Query 1001 TTGTCTCTTTGTGTGTAACCATAGGACTTTGTTGGACCCTCTCTATGTTGCATTCGC-CT 1059
|||||||||||||||||||||||| || || |||||||| || || || ||| ||| ||
Sbjct 1065 TTGTCTCTTTGTGTGTAACCATAGAACGTTATTGGACCCACTTTACATTTCATACGCTCT 1124
Query 1060 TGaa-aaagaaaaacataaaaaCTGTAACGTATAGTTTGAGTAGGGTATCCGAGATTCTG 1118
|| |||||||||||| ||| | || ||||||||| | || || |||| ||| |||||
Sbjct 1125 --AAGAAAGAAAAACATGAAAGCCGTGACGTATAGTCTAAGCAGATTATCTGAGCTTCTG 1182
Query 1119 GCTCCGATCAAGACGGTGAGACTT-ACCCGTGATCGGGTGAGTGACGGTCAAGCCATGGA 1177
|||||||||||||| || ||| || || |||||||| || | || ||||||||||||||
Sbjct 1183 GCTCCGATCAAGACCGTTAGA-TTGACTCGTGATCGAGTCAAAGATGGTCAAGCCATGGA 1241
Query 1178 GAAATTGTTGA-CCGAAGGAGATCTCGTGGTTTGTCCTGAAGGAACCACCTGTAGAGAAC 1236
||||||| ||| || | |||||||||||||||||||| ||||| || || |||||||| |
Sbjct 1242 GAAATTGCTGAGCC-AGGGAGATCTCGTGGTTTGTCCGGAAGGGACTACGTGTAGAGAGC 1300
Query 1237 CTTACATGCTTAGGTTTAG-CC-CTTTGTTCACCGAGGTTAGTGACGTCATCGTTCCGGT 1294
||||| ||||| ||||||| || |||| | | | |||||| ||||||||||||| || ||
Sbjct 1301 CTTACTTGCTTCGGTTTAGTCCACTTT-T-CTCTGAGGTTTGTGACGTCATCGTACCTGT 1358
Query 1295 GGCCGT-GACGTCAAACGTGACCTTCTTCTATGGTACAACGGCAAGTGGTCTTAAGGCCT 1353
|| | ||| ||| ||||||| ||||||||||| || ||||| |||||||||||||| |
Sbjct 1359 TGCTATTGAC-TCACACGTGACTTTCTTCTATGGCACGACGGCTAGTGGTCTTAAGGCAT 1417
Query 1354 TTGA-CCCGCTCTTCTTCCTCATGGATCCTTATCC-TACCTACACCATCCAATTTCTCGA 1411
|||| ||| | |||||||| || |||||| ||| | |||||||| || |||| || ||
Sbjct 1418 TTGATCCCATT-TTCTTCCTTTTGAATCCTT-TCCCTTCCTACACCGTCAAATTGCTTGA 1475
Query 1412 CCCTGTCTCCGG---T-GC-C----ACGTGCCAAG-A-TCC-TGA---TGGGAA-GTTGA 1455
||||||||| || | || | ||||| | || | ||| ||| ||| || ||| |
Sbjct 1476 CCCTGTCTCTGGAAGTAGCTCGTCCACGTGTCGAGGAGTCCCTGACAATGGAAAAGTT-A 1534
Query 1456 AGTTTGAGGTGGCCAATCATGTTCAG-AGTGAGATTGGGAAGGCGTTGGA-TTTCGAGTG 1513
| || |||||||| ||||| || ||| | |||||| ||||| ||||||| ||| |||||
Sbjct 1535 ACTTCGAGGTGGCTAATCACGTGCAGCA-TGAGATCGGGAATGCGTTGGGGTTT-GAGTG 1592
Query 1514 CAC-AAGTCTCACTAGAAAAGACAAGTATTTGATCTTGGCCGGTAATAATGGAGTAGTTA 1572
||| || ||||| |||| ||| ||||| |||||||||||||||||||| ||||| || |
Sbjct 1593 CACCAAC-CTCACGAGAAGAGATAAGTACTTGATCTTGGCCGGTAATAACGGAGTTGTCA 1651
Query 1573 AGAAAAATTAA 1583
||||||| |||
Sbjct 1652 AGAAAAAATAA 1662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5