BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943568
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02180.1 | Symbols: | DC1 domain-containing protein | chr4:... 244 3e-64
AT4G09690.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 219 2e-56
AT4G01760.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 174 4e-43
AT4G01920.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 148 3e-35
> AT4G02180.1 | Symbols: | DC1 domain-containing protein | chr4:959964-963517
FORWARD LENGTH=2970
Length=2970
Score = 244 bits (132), Expect = 3e-64
Identities = 238/287 (83%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 26 ATGGATTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAAT 85
|||||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||
Sbjct 103 ATGGATTCTGAGGGAGTGTTAATGCCGTTGGTCCATGAACATCTTATGATGCCTTGGAAT 162
Query 86 GATCTAAGGAAAGGTGATTGCTGTGGACACTTGGAAGCTATCAGTGATGGCTACTATTGT 145
|||||||||||||||||||| ||||||| || | ||||| |||||| ||| || |||||
Sbjct 163 GATCTAAGGAAAGGTGATTGTTGTGGACTCTCGAAAGCTGTCAGTGTTGGTTATTATTGC 222
Query 146 AAAACCTGCGATTTCTTTTTAC-ACAAGAAATGTGTCCACTCAC-CCGAATTTATCGAAC 203
|||| ||||||||| ||| | |||||||||||| | | || | |||| |||||| |||
Sbjct 223 AAAAGCTGCGATTT-TTTCGCCCACAAGAAATGTGGCGAGTC-CTCCGAGTTTATCCAAC 280
Query 204 ACCCATCTCACCCCGATCACACTCTTCGGCTTCAAAGTA---AAC-CACGTCATAACTGC 259
| |||||||||||| |||||||||||| ||||| ||||| || | || ||| ||||
Sbjct 281 ATCCATCTCACCCCAATCACACTCTTCAGCTTCGAAGTAGCGAAGGCT-GTAATAGCTGC 339
Query 260 AGTTTATGTGGCAAGAGAAAATTGAAT-A--TATTCTATCGTTGTGA 303
| ||||||||| ||| || ||| | | | ||||||||||||||||
Sbjct 340 AATTTATGTGG-AAG-GACCATT-AGTGACCTATTCTATCGTTGTGA 383
> AT4G09690.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:6124897-6126120 FORWARD LENGTH=1038
Length=1038
Score = 219 bits (118), Expect = 2e-56
Identities = 176/203 (87%), Gaps = 7/203 (3%)
Strand=Plus/Plus
Query 31 TTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAATGATCT 90
|||||||||||||| | | ||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 6 TTCTGAGGGAGTGTCACTACCGTTGATCCACGAGCATCTTATGATACCTTGGAATGACCT 65
Query 91 AAGGAAAGGTGATTGCTGTGGACACTTGGAAGCTATCAGTGATGGCTACTATTGTAAAAC 150
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 66 GAGGAAAGGTGATTGTTGTGGACGCTTGGAAGCTATCAGTGATGGCTACTATTGCAAAAG 125
Query 151 CTGCGATTTCTTTTTACACAAGAAATGTGTCCACTCA---C-CCGAATTTATCGAACACC 206
||| ||||||||| | ||||||||||||| | | | | | |||| |||||||||||||
Sbjct 126 CTGTGATTTCTTTGTCCACAAGAAATGTGGCGA-TGAGTGCTCCGAGTTTATCGAACACC 184
Query 207 CATCTCACCCCGAT-CACACTCT 228
||| |||| || || ||||||||
Sbjct 185 CATGTCACTCC-ATTCACACTCT 206
> AT4G01760.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:759131-761134 REVERSE LENGTH=2004
Length=2004
Score = 174 bits (94), Expect = 4e-43
Identities = 177/216 (82%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 26 ATGGATTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAAT 85
||||| ||||| ||||||| | | ||||||||||||||||||| |||||||||||| |||
Sbjct 1 ATGGACTCTGATGGAGTGTCAGTACCGTTGATCCACGAGCATCTTATGATGCCTTGTAAT 60
Query 86 GATCTAAGGAAAGGTGATTGCTGTGGA-CACTTGGAAGCTATCAGTGATGGCTACTATTG 144
||| | |||| ||||||||| ||| || | |||||||||||||||||||||||||||||
Sbjct 61 GATTTGAGGAGAGGTGATTGTTGT-GAGCGTTTGGAAGCTATCAGTGATGGCTACTATTG 119
Query 145 TAAAACCTGCGATTTCTTTTTACACAAGAAATGTG-TCCACTCA--CC-C-GAATTTATC 199
| ||||||||||||||| | ||||||||||||| | || | || | |||| ||
Sbjct 120 CACAACCTGCGATTTCTTCGTCCACAAGAAATGTGGTG-ACG-AGGCCTCTGAATGCATT 177
Query 200 GAACACCCATCTCACCCCGATCACACTCTTCGGCTT 235
||| | |||| ||| || ||||| |||||||||||
Sbjct 178 GAAAATCCATTTCATTCCAATCACCCTCTTCGGCTT 213
> AT4G01920.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:828890-831200 REVERSE LENGTH=2311
Length=2311
Score = 148 bits (80), Expect = 3e-35
Identities = 181/226 (80%), Gaps = 22/226 (10%)
Strand=Plus/Plus
Query 26 ATGGATTCTGAGGGAGTGTTAATGCCGTTGATCCACGAGCATCATATGATGCCTTGGAAT 85
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 122 ATGGATTCTAAGGGAGTGTTAATGCCGTTGATCCACGAGCATCTTATGATGCCTTGGAAA 181
Query 86 GATCT-AAG-GAAA-----G--GTGATTGCTGTGGACACTTGGAAGCTATCAGTGATGGC 136
|||| || || | ||| ||||||||||| ||| |||||||||||||||||
Sbjct 182 AATCTGAAAAGAGGTCCTTGCTGTGGTTGCTGTGGACGCTTTGAAGCTATCAGTGATGGA 241
Query 137 TACTATTGTAAAACCTGCGATTTCTTTT-TAC-ACAAGAAAT-GTG-TC-C-A-CTCACC 189
||||| || |||||||||||||| ||| | | | || |||| ||| | | | | | ||
Sbjct 242 TACTACTGCAAAACCTGCGATTT-TTTCGTCCGA-AA-AAATTGTGCTGACGAGCCCTCC 298
Query 190 CGAATTTATCGAA-CACCCATCTCACCCCGATCACACTCTTCGGCT 234
|||| |||| || || |||||||||||| | |||||||||| |||
Sbjct 299 -GAATATATC-AAGCATCCATCTCACCCCAAGCACACTCTTCAGCT 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5