BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943572 Length=1571 Score E Sequences producing significant alignments: (Bits) Value AT4G01730.1 | Symbols: | DHHC-type zinc finger family protein ... 2422 0.0 > AT4G01730.1 | Symbols: | DHHC-type zinc finger family protein | chr4:749574-752034 FORWARD LENGTH=1527 Length=1527 Score = 2422 bits (1311), Expect = 0.0 Identities = 1458/1530 (95%), Gaps = 6/1530 (0%) Strand=Plus/Plus Query 21 ATGACGAGACGACGCCATGGCTGGCAACGACCATTACACCCATTACAGATTGTGGGAGCT 80 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGACGAGAAGACGCCATGGCTGGCAACGACCATTACACCCTTTACAGATTGTGGGAGCT 60 Query 81 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTCTTCCTCGGGTTTTTCCTGGGGAAT 140 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 61 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTATTCCTCGGGTTTTTCTTGGGGAAT 120 Query 141 CGAATAGCTAATATCTCGCTTCTTTCGGTTTACTCGTTTGTGGCGGTTTCGGTTATAGTT 200 ||||||||| |||| ||||||||||||||| ||| | |||||||||||||||||||||| Sbjct 121 CGAATAGCTGTTATCGCGCTTCTTTCGGTTTTCTCCTCTGTGGCGGTTTCGGTTATAGTT 180 Query 201 TTGTTCGTTAGGTGTACTGCGATTGATCCTACGGATAAGACTAGTGCTAAGAAAAAGAGA 260 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 181 TTATTCGTTAGGTGTACTGCGATTGATCCCACGGATAAGACTAGTGCTAAGAAAAAGAGA 240 Query 261 AAGGCTAAATCCAAAGCAGTCTTGATGAAGCTGAGAGTCAAGGTTGTTTTAAGTCAAGTT 320 |||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||| Sbjct 241 AAGGATAAATCCAAAGGGGTCTTGATGAAGCTGAGAGTCAAGGTTGTTCTGAGTCAAGTT 300 Query 321 GTTGTGAGGTTTTTCAGGAGATTAGAGA-GAAAGATCTTGAGAAATTTTCTCAGACGTAC 379 |||||||||||||||||||||||||||| |||| ||||| || |||||||| ||| | || Sbjct 301 GTTGTGAGGTTTTTCAGGAGATTAGAGAGGAAA-ATCTTAAGGAATTTTCTTAGAAGAAC 359 Query 380 GTATTTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTCCTTCCATTTCCACTTGT 439 ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 360 TTATCTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTTCTTCCATTTCCACTTGT 419 Query 440 CATGAAAGATGATGATCCTGTTACACCAGATCCTAAGGAAGAAGATGATATCTCTTATTG 499 ||||||||||||||| |||||||||| |||||||| || |||||||||||||||||||| Sbjct 420 TATGAAAGATGATGATTCTGTTACACCTGATCCTAAAGAGGAAGATGATATCTCTTATTG 479 Query 500 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 559 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 539 Query 560 TGTCGAAGGGTTTGATCACCATTGCAGGTGGCTTAACAACTGCGTTGGGAAAAAGAATTA 619 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 540 TGTCGAAGGGTTTGATCACCATTGTAGGTGGCTTAATAACTGCGTTGGGAAAAAGAATTA 599 Query 620 CACGACGTTCATACTCCTAATGGTTTTCGTCTTGCTCATGCTAATAATAGAAGGTGGAAC 679 ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 600 CACGACGTTTATACTCCTGATGGTTTTCGTCTTGCTTATGCTAATAATAGAAGGTGGAAC 659 Query 680 TGC-CATTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGGATGGGAATCGAATTGA 738 || | ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| Sbjct 660 AGCTC-TTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGAATGGAAATGGAATTGA 718 Query 739 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTGTTATCTTGG 798 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 719 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTATTATCTTGG 778 Query 799 TCTTGTTCACGGCCTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 858 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 TCTTGTTCACGGCTTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 838 Query 859 TCATAAGAAAGGGGATGAGAACATATGACTATATATTAGCAATGAAGGAGGAGAATCAAT 918 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 839 TCATAAGAAAGGGGATGAGAACATATGACTACATATTAGCGATGAAGGAGGAGAATCAAT 898 Query 919 TTGCAGAAGTGGATCCTTTTGATGAATTAGATTCATCTTCAGATGAAAGCTCGGATTTTG 978 || |||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 899 TTACAGAAGTGGACCCTTTTGATGAATTAGATTCGTCTTCAGATGAAAGCTCAGATTTTG 958 Query 979 ATTCGCCGGAAAGATCAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1038 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 ATTCGCCTGAAAGATTAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1018 Query 1039 AGAATCAGCAGAGACTGTCGATAAAAATAGAAGGAGATGAAC-GTTCACCTTCTTCCACG 1097 |||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| Sbjct 1019 AGAATCAGCAGAGACTATCCATAAAAATAGAAGGAGATGAACAGT-CACCTTCTTCCACG 1077 Query 1098 GTGATCAACAAGAAACCGGGTTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1157 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1078 CTGATCAACAAGAAACCGGGGTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1137 Query 1158 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGGCGAAA 1217 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1138 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGACGAAA 1197 Query 1218 CCAGTTTCCGGGGCTGAAGAAGATTCACTTAAGCCACTTCCATTAGAGACGAAATTCGGA 1277 |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1198 CCAGTTTCCGGGACTGAAGAAAATTCACTTAAGCCACTTCCATTAGAGACCAAATTCGGA 1257 Query 1278 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCCACCATCAACAACTGCAGCAGTA 1337 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1258 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCAACCATCAACAACTGCAGCAGTA 1317 Query 1338 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCAAGAAGAAGGTTCTCAGGCTCTTCA 1397 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1318 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCACGAAGAAGGTTCTCAGGCTCTTCA 1377 Query 1398 TCTTCAACTGTGCCATCACCGAAGCAAAAATACAGAAGTAACTTTGACTTGAAGCTAACT 1457 |||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1378 TCTTCAACTGTGCCTTCGCCGAAGCAAAAATACAGAACTAACTTTGACTTGAAGCTAACT 1437 Query 1458 GAAGTCTCTAGAGAGCTTGAAAGTTACATCTCAAGACAGGTTTTGTGTTCTGTAATAAAA 1517 ||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||| Sbjct 1438 GAAGTCTCTAGGGAGCTGGAAAGTTACATCTCAAGACAGGTTTTATGTTCTGTGATAAAA 1497 Query 1518 CAAGATGGAAGTGAAGCATCACCAAGATaa 1547 |||||||||||||||||||||||||||||| Sbjct 1498 CAAGATGGAAGTGAAGCATCACCAAGATAA 1527 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77559842025 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5