BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943572
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01730.1 | Symbols: | DHHC-type zinc finger family protein ... 2422 0.0
> AT4G01730.1 | Symbols: | DHHC-type zinc finger family protein
| chr4:749574-752034 FORWARD LENGTH=1527
Length=1527
Score = 2422 bits (1311), Expect = 0.0
Identities = 1458/1530 (95%), Gaps = 6/1530 (0%)
Strand=Plus/Plus
Query 21 ATGACGAGACGACGCCATGGCTGGCAACGACCATTACACCCATTACAGATTGTGGGAGCT 80
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGACGAGAAGACGCCATGGCTGGCAACGACCATTACACCCTTTACAGATTGTGGGAGCT 60
Query 81 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTCTTCCTCGGGTTTTTCCTGGGGAAT 140
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 61 GTTATATATAGTGTTCTGGTGGCAGCCTTTTATGTATTCCTCGGGTTTTTCTTGGGGAAT 120
Query 141 CGAATAGCTAATATCTCGCTTCTTTCGGTTTACTCGTTTGTGGCGGTTTCGGTTATAGTT 200
||||||||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 121 CGAATAGCTGTTATCGCGCTTCTTTCGGTTTTCTCCTCTGTGGCGGTTTCGGTTATAGTT 180
Query 201 TTGTTCGTTAGGTGTACTGCGATTGATCCTACGGATAAGACTAGTGCTAAGAAAAAGAGA 260
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 TTATTCGTTAGGTGTACTGCGATTGATCCCACGGATAAGACTAGTGCTAAGAAAAAGAGA 240
Query 261 AAGGCTAAATCCAAAGCAGTCTTGATGAAGCTGAGAGTCAAGGTTGTTTTAAGTCAAGTT 320
|||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 241 AAGGATAAATCCAAAGGGGTCTTGATGAAGCTGAGAGTCAAGGTTGTTCTGAGTCAAGTT 300
Query 321 GTTGTGAGGTTTTTCAGGAGATTAGAGA-GAAAGATCTTGAGAAATTTTCTCAGACGTAC 379
|||||||||||||||||||||||||||| |||| ||||| || |||||||| ||| | ||
Sbjct 301 GTTGTGAGGTTTTTCAGGAGATTAGAGAGGAAA-ATCTTAAGGAATTTTCTTAGAAGAAC 359
Query 380 GTATTTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTCCTTCCATTTCCACTTGT 439
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 TTATCTGGATCCATGGAAAAGCAGTGTGCAGCTAGAACCACTTCTTCCATTTCCACTTGT 419
Query 440 CATGAAAGATGATGATCCTGTTACACCAGATCCTAAGGAAGAAGATGATATCTCTTATTG 499
||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||
Sbjct 420 TATGAAAGATGATGATTCTGTTACACCTGATCCTAAAGAGGAAGATGATATCTCTTATTG 479
Query 500 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTCACTTTGTGATTTAGAGGTTAAACGCAGCAGTAAGCATTGCAGGACATGTAACCGGTG 539
Query 560 TGTCGAAGGGTTTGATCACCATTGCAGGTGGCTTAACAACTGCGTTGGGAAAAAGAATTA 619
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 540 TGTCGAAGGGTTTGATCACCATTGTAGGTGGCTTAATAACTGCGTTGGGAAAAAGAATTA 599
Query 620 CACGACGTTCATACTCCTAATGGTTTTCGTCTTGCTCATGCTAATAATAGAAGGTGGAAC 679
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 CACGACGTTTATACTCCTGATGGTTTTCGTCTTGCTTATGCTAATAATAGAAGGTGGAAC 659
Query 680 TGC-CATTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGGATGGGAATCGAATTGA 738
|| | ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 660 AGCTC-TTGCCGTATTTGTCAGATGTTTTGTGGACAAGAAAGGAATGGAAATGGAATTGA 718
Query 739 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTGTTATCTTGG 798
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 AGAGAAGGCTTTATGTAGAGTTCCCTCAATGGGCTCTTGCTACAATATCTATTATCTTGG 778
Query 799 TCTTGTTCACGGCCTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 858
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCTTGTTCACGGCTTATGGCTCAGCCGCCATGGGGCAGCTTTTCCTCTTCCATGTAGTTC 838
Query 859 TCATAAGAAAGGGGATGAGAACATATGACTATATATTAGCAATGAAGGAGGAGAATCAAT 918
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 839 TCATAAGAAAGGGGATGAGAACATATGACTACATATTAGCGATGAAGGAGGAGAATCAAT 898
Query 919 TTGCAGAAGTGGATCCTTTTGATGAATTAGATTCATCTTCAGATGAAAGCTCGGATTTTG 978
|| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 899 TTACAGAAGTGGACCCTTTTGATGAATTAGATTCGTCTTCAGATGAAAGCTCAGATTTTG 958
Query 979 ATTCGCCGGAAAGATCAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1038
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATTCGCCTGAAAGATTAAGACCAACGTTTATCTCCAAGTTTATGTGCAGGAAAGCAAATG 1018
Query 1039 AGAATCAGCAGAGACTGTCGATAAAAATAGAAGGAGATGAAC-GTTCACCTTCTTCCACG 1097
|||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||
Sbjct 1019 AGAATCAGCAGAGACTATCCATAAAAATAGAAGGAGATGAACAGT-CACCTTCTTCCACG 1077
Query 1098 GTGATCAACAAGAAACCGGGTTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1157
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTGATCAACAAGAAACCGGGGTTTCATGTAAGCATAAACCCATGGAAACTGATAACATTA 1137
Query 1158 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGGCGAAA 1217
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 AGCAGTGAAAAGGCTCTACAAGCAGCTGAGAAAGCAAAGGAAAGACTGAGGAAGACGAAA 1197
Query 1218 CCAGTTTCCGGGGCTGAAGAAGATTCACTTAAGCCACTTCCATTAGAGACGAAATTCGGA 1277
|||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1198 CCAGTTTCCGGGACTGAAGAAAATTCACTTAAGCCACTTCCATTAGAGACCAAATTCGGA 1257
Query 1278 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCCACCATCAACAACTGCAGCAGTA 1337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1258 CTTTTGTTAGATCCTGACAATAACAACACTGTGTTGCAACCATCAACAACTGCAGCAGTA 1317
Query 1338 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCAAGAAGAAGGTTCTCAGGCTCTTCA 1397
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1318 AAGCTTCAGGTTTCACCTGGAAGATTCTCAAGCCCACGAAGAAGGTTCTCAGGCTCTTCA 1377
Query 1398 TCTTCAACTGTGCCATCACCGAAGCAAAAATACAGAAGTAACTTTGACTTGAAGCTAACT 1457
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 TCTTCAACTGTGCCTTCGCCGAAGCAAAAATACAGAACTAACTTTGACTTGAAGCTAACT 1437
Query 1458 GAAGTCTCTAGAGAGCTTGAAAGTTACATCTCAAGACAGGTTTTGTGTTCTGTAATAAAA 1517
||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1438 GAAGTCTCTAGGGAGCTGGAAAGTTACATCTCAAGACAGGTTTTATGTTCTGTGATAAAA 1497
Query 1518 CAAGATGGAAGTGAAGCATCACCAAGATaa 1547
||||||||||||||||||||||||||||||
Sbjct 1498 CAAGATGGAAGTGAAGCATCACCAAGATAA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5