BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943575
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | Flavin containing am... 2710 0.0
> AT4G01690.1 | Symbols: PPOX, HEMG1, PPO1 | Flavin containing
amine oxidoreductase family | chr4:729887-732433 FORWARD LENGTH=1780
Length=1780
Score = 2710 bits (1467), Expect = 0.0
Identities = 1598/1663 (96%), Gaps = 2/1663 (0%)
Strand=Plus/Plus
Query 1 TTCTGAATTCTCTGCGATTTCCATGGAATTATCTCTTCTCCGTCCGACGACTCAATCGCT 60
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 21 TTCCGAATTCTCTGCGATTTCCATGGAGTTATCTCTTCTCCGTCCGACGACTCAATCGCT 80
Query 61 TCTTCCGTCGTTCTCGAAACCGAATCTCCGATTAAATGTCTATAAGCCTCTTAAG-CTCC 119
|||||||||||| ||||| || ||||||||||||||||| |||||||||||| || ||||
Sbjct 81 TCTTCCGTCGTTTTCGAAGCCCAATCTCCGATTAAATGTTTATAAGCCTCTT-AGACTCC 139
Query 120 GTTGTTCGGTGGCCGGTGGACCAACCGTCGGATCTTCCAAAATTGGCGGCGGAGGAGGCA 179
||||||| ||||||||||||||||||||||||||||| ||||| | |||||||||||||
Sbjct 140 GTTGTTCAGTGGCCGGTGGACCAACCGTCGGATCTTCAAAAATCGAAGGCGGAGGAGGCA 199
Query 180 CCACCGTCACGGCGGATTGTGTGATTGTCGGCGGAGGTATCAGTGGTCTTTGCATCGCGC 239
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 200 CCACCATCACGACGGATTGTGTGATTGTCGGCGGAGGTATTAGTGGTCTTTGCATCGCTC 259
Query 240 AGGCGCTTGCTACGAAGCATCCTAACGCTGCACCGAATTTGATTGTGACTGAGGCTAAGG 299
||||||||||||| ||||||||| | ||||| |||||||| |||||||| ||||||||||
Sbjct 260 AGGCGCTTGCTACTAAGCATCCTGATGCTGCTCCGAATTTAATTGTGACCGAGGCTAAGG 319
Query 300 ATCGTGTTGGAGGCAACATTATCACTCGTGAAGAGAATGGTTTTCTCTGGGAAGAAGGTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 ATCGTGTTGGAGGCAACATTATCACTCGTGAAGAGAATGGTTTTCTCTGGGAAGAAGGTC 379
Query 360 CTAATAGTTTTCAGCCGTCTGATCCTATGCTCACTATGGTGGTAGATAGTGGTTTGAAGG 419
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CCAATAGTTTTCAACCGTCTGATCCTATGCTCACTATGGTGGTAGATAGTGGTTTGAAGG 439
Query 420 ATGATTTGGTGTTGGGAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATGATTTGGTGTTGGGAGATCCTACTGCGCCAAGGTTTGTGTTGTGGAATGGGAAATTGA 499
Query 480 GGCCGGTTCCGTCGAAGTTAACAGACTTACCGTTCTTCGATTTGATGAGCATTGGTGGGA 539
|||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 500 GGCCGGTTCCATCGAAGCTAACAGACTTACCGTTCTTTGATTTGATGAGTATTGGTGGGA 559
Query 540 AGATTAGAGCTGGGTTTGGTGCACTTGGCATTCGACCATCACCTCCAGGTCGTGAAGAAT 599
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 560 AGATTAGAGCTGGTTTTGGTGCACTTGGCATTCGACCGTCACCTCCAGGTCGTGAAGAAT 619
Query 600 CTGTTGAGGAGTTTGTACGGCGTAACCTTGGTGATGAGGTTTTTGAGCGCCTGATTGAAC 659
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 620 CTGTGGAGGAGTTTGTACGGCGTAACCTCGGTGATGAGGTTTTTGAGCGCCTGATTGAAC 679
Query 660 CGTTTTGTTCAGGTGTTTATGCGGGTGATCCTTCAAAACTGAGTATGAAAGCAGCGTTTG 719
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 680 CGTTTTGTTCAGGTGTTTATGCTGGTGATCCTTCAAAACTGAGCATGAAAGCAGCGTTTG 739
Query 720 GGAAGGTTTGGAAACTAGAGCAAAATGGTGGAAGCATCATAGGTGGTACTTTTAAGGCAA 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 740 GGAAGGTTTGGAAACTAGAGCAAAATGGTGGAAGCATAATAGGTGGTACTTTTAAGGCAA 799
Query 780 TTCAGGAGAGGAAAAACGCTCCCAAGGCAGAGCGAGACCCGCGCCTGCCAAAACCAAAGG 839
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 800 TTCAGGAGAGGAAAAACGCTCCCAAGGCAGAACGAGACCCGCGCCTGCCAAAACCACAGG 859
Query 840 GCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTACCAGAAGCAATATCTGCAA 899
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 860 GCCAAACAGTTGGTTCTTTCAGGAAGGGACTTCGAATGTTGCCAGAAGCAATATCTGCAA 919
Query 900 GGTTAGGTAGCAAAGTTAAGTTGTCTTGGAAGCTCTCAGGTATCACTAAGCTGGACAGCG 959
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 920 GATTAGGTAGCAAAGTTAAGTTGTCTTGGAAGCTCTCAGGTATCACTAAGCTGGAGAGCG 979
Query 960 GAGGATACAACTTAACCTATGAGACTCCAGATGGTGTAGTTTCCGTGCAGAGCAAAAGTG 1019
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 980 GAGGATACAACTTAACATATGAGACTCCAGATGGTTTAGTTTCCGTGCAGAGCAAAAGTG 1039
Query 1020 TTGTAATGACTGTGCCATCTCATGTTGCAAGCGGTCTCTTGCGCCCTCTTTCTGAATCTG 1079
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1040 TTGTAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCTGAATCTG 1099
Query 1080 CAGCAAATGCACTCTCAAAACTTTATTATCCACCAGTTGCAGCAGTCTCTGTCTCGTACC 1139
| |||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||
Sbjct 1100 CTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCAGTATCTATCTCGTACC 1159
Query 1140 CGAAAGAAGCAATCCGAACAGAATGTTTAATAGATGGTGAACTAAAGGGTTTTGGGCAAT 1199
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1160 CGAAAGAAGCAATCCGAACAGAATGTTTGATAGATGGTGAACTAAAGGGTTTTGGGCAAT 1219
Query 1200 TGCATCCGCGCACGCAAGGAGTTGAAACATTAGGAACTATATACAGCTCCTCGCTCTTTC 1259
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1220 TGCATCCACGCACGCAAGGAGTTGAAACATTAGGAACTATCTACAGCTCCTCACTCTTTC 1279
Query 1260 CAAATCGAGCACCGCCCGGAAGAATTTTGCTGTTGAACTACATTGGCGGGTCTACAAACA 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 CAAATCGCGCACCGCCCGGAAGAATTTTGCTGTTGAACTACATTGGCGGGTCTACAAACA 1339
Query 1320 CCGGGATTCTGTCCAAGTCCGAAGGTGAGTTAGTGGAAGCAGTTGACAGGGATTTGAGGA 1379
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1340 CCGGAATTCTGTCCAAGTCTGAAGGTGAGTTAGTGGAAGCAGTTGACAGAGATTTGAGGA 1399
Query 1380 AAATGCTAATTAAGCCTAATTCGACTGATCCACTTAAATTAGGAGTTAGGGTATGGCCTC 1439
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1400 AAATGCTAATTAAGCCTAATTCGACCGATCCACTTAAATTAGGAGTTAGGGTATGGCCTC 1459
Query 1440 AAGCCATTCCTCAGTTTCTAGTTGGTCACTTTGATATCCTTGACACGGCTAAATCATCTC 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 AAGCCATTCCTCAGTTTCTAGTTGGTCACTTTGATATCCTTGACACGGCTAAATCATCTC 1519
Query 1500 TAACATCTTCGGGCTACGAAGGGCTATTTTTGGGTGGCAATTACGTTGCTGGTGTAGCCT 1559
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1520 TAACGTCTTCGGGCTACGAAGGGCTATTTTTGGGTGGCAATTACGTCGCTGGTGTAGCCT 1579
Query 1560 TAGGCCGGTGTGTAGAAGGCGCATATGAAACCGCGACTGAGGTCAACAACTTCATGTCAC 1619
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1580 TAGGCCGGTGTGTAGAAGGCGCATATGAAACCGCGATTGAGGTCAACAACTTCATGTCAC 1639
Query 1620 GGTACGCTTACAAGTCAATGTAAAACATTAAACCTCTCAGCTT 1662
||||||||||||||| |||||||||||||||| ||| ||||||
Sbjct 1640 GGTACGCTTACAAGTAAATGTAAAACATTAAATCTCCCAGCTT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82128091620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5