BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943577
Length=779
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1197 0.0
> AT4G01670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G62070.1);
Has 141 Blast hits to 139 proteins in 15 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 138; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr4:711192-712643
REVERSE LENGTH=1154
Length=1154
Score = 1197 bits (648), Expect = 0.0
Identities = 731/769 (95%), Gaps = 13/769 (2%)
Strand=Plus/Plus
Query 10 AGAG-TTATTATTATGGCTTTTGATGAAGATATGAAAATGGCGTCTTTCTTAAGAGAAGA 68
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGAGTTTATTACTATGGCTTTTGATGAAGATATGAAAATGGCGTCTTTCTTAAGAGAAGA 179
Query 69 AGAAGAACAACACTATTCTTTATCAAGACTCTCCGTTTGTTCCAACTACGACGGCGATGA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGAAGAACAACACTATTCTTTATCAAGACTCTCCGTTTGTTCCAACTACGACGGCGATGA 239
Query 129 AGCCGACGGTGAATCTTCTGATTCCGACGAGAAACGTGTCGGCGGCGGCGGAGGAGAGAA 188
|||||||||||| ||||||| |||||||||||||||||| | | ||||||||| |||||
Sbjct 240 AGCCGACGGTGAGTCTTCTGCTTCCGACGAGAAACGTGTTGTCCACGGCGGAGGGGAGAA 299
Query 189 ATCTATGGAGGAGCTAAATTTTTCTGATTCTGATAAAGGATCAACCGGTTGTCAATCACT 248
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||
Sbjct 300 ATCCATGGAGGAGCTAAATTTTTCAGATTCTGATAAAGAATCAACCGGTTGTCAATCTCT 359
Query 249 TCCGGCGACACCTCC---AC---GA---CGGAGA--CGG-CGAAGAGGAGGATATTTGGC 296
|||||||||||||| || || |||||| ||| || ||||||||||||| ||
Sbjct 360 CCCGGCGACACCTCCGAGACGGAGACGGCGGAGAGGCGGTGGAGGAGGAGGATATTTAGC 419
Query 297 GGTGAGTTCTCCTGTTTCCGGCGATAAAGCTTACGCTAGCGAGAACGAAGTTCAAAAGAC 356
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 GGTGAGTTCTCCGGTTTCCGGCGATAAAGCTTACGCTAGCGAGAACGAAGTACAAAAGAC 479
Query 357 GAATAACAATCAGAGGAGCAGGAGGAGACTGAAACCGGAGTGTCCACCGTGGGTTGATAG 416
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 GAATAACAATCAGAGGAGAAGGAGGAGATTGAAACCGGAGTGTCCACCGTGGGTTGATAG 539
Query 417 TATGCGGAGGAGCTACGGCGGAGATGAACAGAGTGGTCACGGTGGTTACGGAGGAGGAGT 476
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 TATGCGGAGGAGCTACGTCGGAGATGAACAGAGTAGTCACGGTGGTTACGGAGGAGGAGT 599
Query 477 GGTGGTTGTGACGAGGCCTATAGGAGGAGGAAGGCCATTGTGTATGGATTTAGAAGAAGT 536
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGTGGTTGTTACGAGGCCTATAGGAGGAGGAAGGCCATTGTGTATGGATTTAGAAGAAGT 659
Query 537 CAAAGCTTGTAAAGATTTGGGGTTTGAGCTTGAACCGGGTCGGGTTTCGTATTCCGGGTC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAAAGCTTGTAAAGATTTGGGGTTTGAGCTTGAACCGGGTCGGGTTTCGTATTCCGGGTC 719
Query 597 AACGATGGATACTAGTAGTGGCGGCAATTCTCCTATCTCTTCTAACCACCGTATTTCGAG 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AACGGTGGATACTAGTAGTGGCGGCAATTCTCCTATCTCTTCTAACCACCGTATTTCGAG 779
Query 657 TCCCGGGGATGATCCAAAAGACGTGAAAGCGAGGCTTAAGGCGTGGGCTCATGCTGTGGC 716
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TCCCGGGGATGATCCAAAAGACGTGAAAGCGAGGCTTAAGGCGTGGGCTCAAGCTGTGGC 839
Query 717 TTTTGTGTCCACTACTCATCATCAACCTCCTAATTCTTTATGATTCACT 765
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTTTGTGTCCACTACTCATCATCAACCTCCTAATTCTTTATGATTCACT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37876546838
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5