BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943584
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01590.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 636 0.0
AT4G35680.1 | Symbols: | Arabidopsis protein of unknown functi... 202 3e-51
> AT4G01590.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Arabidopsis protein of unknown function
(DUF241) (TAIR:AT4G35680.1); Has 1908 Blast hits to 1345
proteins in 175 species: Archae - 3; Bacteria - 106; Metazoa
- 494; Fungi - 346; Plants - 115; Viruses - 71; Other Eukaryotes
- 773 (source: NCBI BLink). | chr4:688881-690415 REVERSE
LENGTH=1022
Length=1022
Score = 636 bits (344), Expect = 0.0
Identities = 411/442 (93%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 21 ATGTCTTGGAGAGGAAG-CAGAGGAAAACCACAAGG-TGGTGGTGCCGATTATGGCAAGC 78
|||||||||| ||| || | ||||||||||| |||| | ||| | ||||||||||||||
Sbjct 224 ATGTCTTGGAAAGG-AGCCCGAGGAAAACCAAAAGGCT-ATGGCGGCGATTATGGCAAGC 281
Query 79 CTGAGCCTTTTGTCATTTTCCCTGATATTACGTTACCTGATCCGAAATCAATCTCAACAG 138
||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 282 CTGAGCCTTTTGTGATTTTCCCTGAAATTACGTTACCAGATCCAAAATCAATCTCAACAG 341
Query 139 ACTCGCAATTAATTCAAACCTACTTTAGTTTCAATAAGTTTTGGAGAAATTCTCCTTATC 198
||||||||||| |||||| |||||||| |||||||||||||||||| |||||||||||||
Sbjct 342 ACTCGCAATTAGTTCAAAGCTACTTTACTTTCAATAAGTTTTGGAGGAATTCTCCTTATC 401
Query 199 ATTTAGGCGA---TGGTGTTTCTAAGAAAGAGAATGAGAGTTTGGACATTGAGAGGTATT 255
| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct 402 ACTTAGGCGATGGTGGTGTTTCTAAGAAAGAGAAAGAGAGTTTGAACATTGAGAGGTACT 461
Query 256 CAGACTCGTTGAAGCCCAAGATGAAGTCTAATAAGAATGGATCTTTCTTTGATTTTCTTG 315
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 CAGATTCGTTGAAGCCGAAGATGAAGTCTAATAAGAATGGATCTTTCTTTGATTTTCTTG 521
Query 316 TTCTTAGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAG---AACGTC 372
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 522 TTCTTAGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAGAACAACGGC 581
Query 373 CTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGA 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 CTGTGAAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGA 641
Query 433 AGCTTGAAGCTAAGTTTAAGGT 454
||||||||||||||||||||||
Sbjct 642 AGCTTGAAGCTAAGTTTAAGGT 663
> AT4G35680.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16917749-16920008 FORWARD LENGTH=1960
Length=1960
Score = 202 bits (109), Expect = 3e-51
Identities = 128/136 (94%), Gaps = 5/136 (4%)
Strand=Plus/Plus
Query 321 AGACCTGATAACTTCCCTAAAGAACTTCTTGGAGATACTCGAAGAG---AACGTCCTGTG 377
||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 1402 AGACCTGATAACTTCTCTAAAGAACTTGTTGGAGATACTCGAAGAGAACAACGGCCTGTG 1461
Query 378 AAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCTT 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AAGAGAGCTAAATGGAGTCAAGAAGCTGATTTGCAGAAATTGGATGTGTTTGAGAAGCTT 1521
Query 438 GAAG-CTAAGTTTAAG 452
|| | |||||||||||
Sbjct 1522 GA-GTCTAAGTTTAAG 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5