BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943587
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01560.1 | Symbols: MEE49 | Ribosomal RNA processing Brix do... 1637 0.0
> AT4G01560.1 | Symbols: MEE49 | Ribosomal RNA processing Brix
domain protein | chr4:677054-679237 REVERSE LENGTH=1317
Length=1317
Score = 1637 bits (886), Expect = 0.0
Identities = 1025/1090 (94%), Gaps = 17/1090 (2%)
Strand=Plus/Plus
Query 1 CTTCGTTCGCCGT-CGTCGTAAAAATGGGTTTCAAGAGGAAGAAGGGCGATGGTGACGGT 59
||||||||||||| ||||||||||||||| |||||||||||||| | |||||||| |||
Sbjct 50 CTTCGTTCGCCGTCCGTCGTAAAAATGGGGTTCAAGAGGAAGAAAGATGATGGTGATGGT 109
Query 60 GAGGAAATGGAATCAGAAGGTCGTGGAAAGTCTAGTTTCAATGGGACTGAGAAGAGGAGT 119
|||||||||||||| || | |||||||||||||| ||||| |||| ||||||||||| |
Sbjct 110 GAGGAAATGGAATCTGATGTTCGTGGAAAGTCTACTTTCAGTGGGGGTGAGAAGAGGAAT 169
Query 120 GTGATACTTCCTTCGATGATTAAGAACAAGGATAAGAGATCTAAAGTGTATGCGAAGCAA 179
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 170 GTGATACTTCCTTCGATGATTAAGAACAAAGATAAGAGATCAAAAGTGTATGCGAAGCAG 229
Query 180 AAGCATGAGAAGAAAGTGGAGAAGCAGAAGAAGATTAGAGCTCGTGACGCTGCTGAGAAA 239
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 230 AAGCATGAGAAGAAATTGGAGAAGCAGAAGAAGATTAGAGCTCGTGATGCTGCTGAGAAA 289
Query 240 CGAGCTCTAGAGCTTGGAGAAGAGCCTCCACAAAAGATGATTCCGAAGACGATTGAGAAT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 CGAGCTTTAGAGCTTGGAGAAGAGCCTCCACAAAAGATGATTCCGAAGACGATTGAGAAT 349
Query 300 ACCAGAGAAGCTGATGAAACTGTTTGCCGACCTGACGATGAAGAATTGTTTGCTGATATT 359
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 350 ACAAGAGAATCTGATGAAACTGTTTGCAGACCTGACGATGAAGAATTGTTTGCGGATATT 409
Query 360 GATGCTGATGAGTTTAATCCAGTGCTGAGACGTGAGATTACTCCTAAGATCTTGATCACA 419
||||||||||||||||||||||| ||||||||||||||| | |||||| ||||| |||||
Sbjct 410 GATGCTGATGAGTTTAATCCAGTTCTGAGACGTGAGATTGCACCTAAGGTCTTGCTCACA 469
Query 420 ACTTGTCGTTTCAATTCCACTAGAGGACCTGCGTTT-ATATCTGAGTTGCTTTCGGTGAT 478
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 470 ACATGTCGTTTCAATTCCACTAGAGGACCTGC-TTTAATATCTGAGTTGCTTTCGGTGAT 528
Query 479 ACCAAACTCTCATTATCAGAAA-AGAGGAACTTATGATTTGAAAAAGATTGTAGAATACG 537
|||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 529 ACCAAACTCTCATTATCA-AAAGAGAGGAACCTATGATTTGAAGAAGATTGTAGAATACG 587
Query 538 CAACGAAGAAAGATTTTACATCTCTTATTGTCGTCCATACGAATCGTAGAGAACCTGATG 597
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 588 CAACGAAGAAAGATTTTACATCTCTTATTGTTGTTCATACAAATCGTAGAGAACCTGATG 647
Query 598 CCCTTCTTATCATCGGTTTGCCAACTGGTCCTACTGCTCATTTCAAATTGTCTAATCTTG 657
| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 648 CGCTTCTTATCATCGGTTTGCCAAATGGTCCTACTGCTCATTTCAAATTGTCAAATCTTG 707
Query 658 TTCTAAGGAAGGATATTAAGAATCATGGAAATCCTACAAGCCATCAACCAGAACTGGTTT 717
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 708 TTCTAAGGAAGGATATTAAGAATCACGGAAATCCTACAAGCCATCAACCAGAACTGGTTT 767
Query 718 TGAATAACTTTACAACACGTTTAGGGAATCGTGTTGGGAGGTTTTTTCAATCACTCTTCC 777
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 768 TGAATAACTTTACAACGCGTTTAGGGAATCGTGTTGGGAGATTTTTTCAATCACTCTTCC 827
Query 778 CTCCGGATCCTAATTTCCGTGGTAGGAGAGTTGTAACATTTCACAACCAGCGTGACTTTA 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 828 CTCCGGATCCTAATTTCCGTGGTAGGAGAGTTGTAACATTCCACAACCAGCGTGACTTTA 887
Query 838 TATTTTTCAGACATCATCGTTACATATTTGAGACAAAGGAAAGCAAACAGAGTGATAAAG 897
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 888 TATTTTTCAGACATCACCGTTACATATTTGAGACAAAGGAAAGCAA---GAGTGATAAAG 944
Query 898 GAAAAGATGGTGTTCAAGAGACAATAAAACCTCGTCTTCAGGAATGCGGTCCTCGATTCA 957
||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GAAAAGA--------A-GAGACAATAAAACCTCGTCTTCAGGAATGCGGTCCTCGATTCA 995
Query 958 CGCTTAAGCTAGTCACTTTACAACATGGAACCTTTGACACCAAAGGCGGAGAATTTGAAT 1017
||||||||||||| ||| |||| |||||||| |||||||||||||| |||||||||||||
Sbjct 996 CGCTTAAGCTAGTTACTCTACAGCATGGAACTTTTGACACCAAAGGTGGAGAATTTGAAT 1055
Query 1018 GGGTTCATAAGCCTGAAATGGACACGAGCAGGAGAAGGTTCTTCTTATAAATTATGCTGT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1056 GGGTTCATAAGCCTGAAATGGACACGAGCAGGAGAAGGTTCTTCTTATAAATTCTGCTGT 1115
Query 1078 CTTCCGAGTT 1087
||||||||||
Sbjct 1116 CTTCCGAGTT 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5