BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943589
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane m... 1628 0.0
AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing ... 1075 0.0
> AT4G01540.1 | Symbols: ANAC068, NTM1 | NAC with transmembrane
motif1 | chr4:670483-672789 REVERSE LENGTH=1582
Length=1582
Score = 1628 bits (881), Expect = 0.0
Identities = 1305/1496 (87%), Gaps = 84/1496 (6%)
Strand=Plus/Plus
Query 1 GATCTGTTTCTGTATCaaaaaaaTGGTGAAAGATCTGATTGGGTATAGATTTAGTCCGAC 60
||||||||||||| | |||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 140 GATCTGTTTCTGTGT-GAAAAGATGATGAAAGGTCTGATTGGGTATAGATTTAGTCCGAC 198
Query 61 GGGAGAGGAATTGATTAACCATTACCTGAAGAACAAAAATCTGGGTACAAAAACTTTGCT 120
|||||||||| |||| ||||||||||| ||||||||| |||||||| | | || |||
Sbjct 199 GGGAGAGGAAGTGATCAACCATTACCTAAAGAACAAACTTCTGGGTA-AGTA--TTGGCT 255
Query 121 CGTTGATGAAGCCATTAGCGAGATCAACATCTTGAGCCACAAACCCAGCAAGGATTTGCC 180
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 256 CGTTGATGAAGCTATTAGCGAGATCAACATCTTGAGTCACAAACCCAGCAAGGATTTGCC 315
Query 181 TAAGTTAGCTAAGATCCAATCGGAAGATCTTGAATGGTACTTCTTCTCTCTGATTGAGTA 240
||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 316 TAAGTTAGCTAGGATCCAATCGGAAGATCTTGAATGGTATTTCTTCTCTCCGATTGAGTA 375
Query 241 CACGAACCGGAAGAAGAATGAAA-TGAAGAGGACTACAGGTACTGGGTTTTGGAAACCTA 299
|||||||| ||| |||| ||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 376 CACGAACCCGAATAAGA-TGAAAATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTA 434
Query 300 CTGGTGTTGATCGGAAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATCGGTTTTAAGA 359
|||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||
Sbjct 435 CTGGTGTTGATCGGGAAATTAGGGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGA 494
Query 360 AGACGCTTGTGTACCATGAAGGTAAGGGTCCTAATGGAGTTAGAACTCCTTGGGCTATGC 419
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 495 AGACGCTTGTGTACCATGAAGGTAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGC 554
Query 420 ACGAGTATCACATCACTTGCTTGCCTCATGATAAGAGGAAATATGTTATCTGCCAAGTAA 479
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 555 ACGAGTATCACATCACTTGCTTGCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAA 614
Query 480 AGTATAAGGGTAAAGCTGCAGACATTTCATATGAGCCAAGTCGCTCC--GAT-TC-GAAT 535
||||||||||| |||||||||| ||||||||||||||||||| ||| | | || || |
Sbjct 615 AGTATAAGGGTGAAGCTGCAGAAATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATT 674
Query 536 A-C-TACC---AGAGCGATTAACAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCAGCCAG 590
| |||| | |||||||| | ||| | || |||||||||||||||||||||||||
Sbjct 675 CGCATACCGTCATAGCGATTACCGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAG 734
Query 591 GTAGAGAAAATTTCTTGGGTATGTCTTTAGATGATTTG---GAACAAGAGGATCCAAAAA 647
||| ||||||| |||||||||||||| ||||||||||| |||| | | || |||| ||
Sbjct 735 GTAAAGAAAATCTCTTGGGTATGTCTGTAGATGATTTGATAGAACCA-ATGAACCAACAA 793
Query 648 CTTGCTTGCAGCCACAAGGTCCTCACTTAGC-CTTGAATGATGATGAGTTTATCCGTGGA 706
| | |||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 794 GA-G---G-AGCCACAAGGTCCTCACTTAGCTCC-GAATGATGATGAGTTTATACGTGGA 847
Query 707 TTGAGGCATGTTGATCGAGA-ACAAGTTGAATATTTGTTCGCCAATGAAGAAAACATTGA 765
||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 848 TTGAGGCATGTTGATCGAGGGACG-GTTGAATATTTGTTTGCCAATGAAGAAAACATGGA 906
Query 766 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TGGTTTGTCTATGAATGACTTGAGAATCCCAATGATCGTCCAACAAGAGGATCTCTCTGA 966
Query 826 GTGGGATGGATTTAATGCAGACACGTTTTTCAGCGACAACAACAATAACAACAACCTTAA 885
|||||| |||||||| |||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 967 GTGGGAGGGATTTAACGCAGACACCTTTTTCAGCGACAACAACAATAACTATAACCTTAA 1026
Query 886 CGTGCATCA--A-CTAACGCGTTACGGAGATGATTATCGGAATGCAGGTTATAACGGAGG 942
||||||||| | ||||||| |||||| |||| ||| ||||||| || | ||| |
Sbjct 1027 CGTGCATCATCAACTAACGCCTTACGGCGATGGCTATTTGAATGCAT-TT-T--CGG-GT 1081
Query 943 GAATTTTGAAGGCG--TGCATCCCTATCAAGAATTAATAATGCAAGAGAACCGCAACGAT 1000
| | ||||| | | | |||| |||| |||||| | |||||||||||||||||||||
Sbjct 1082 TA-TAACGAAGG-GAATCC-TCCCGATCACGAATTAGTGATGCAAGAGAACCGCAACGAT 1138
Query 1001 CACATGCCAAAGAAACCTTTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1060
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACATGCCAAGGAAACCTGTGACAGGGACCATTGATTATAGCAGCGATAGTGGCAGTGAT 1198
Query 1061 GCTGGATCGATATCTACAACGAGTTACCAAGGAATATCAAGTCCAAATATTAGTGTTGGT 1120
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 GCTGGATCCATATCTACAACGAGTTACCAAGGAACATCAAGTCCAAATATTAGTGTTGGT 1258
Query 1121 AGTTCAAGCAGACGCTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1180
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTTCAAGTAGACACTTGTCAAGTTGCTCAAGCACAGACTCTTGCAAAGATCTACAAACT 1318
Query 1181 TCTGCAGATCCTTCAAT---CAGTAGAGAGACCCGGGAATATCAACTCACACAACGCACT 1237
| | ||||||||||||| ||||||||||| |||||||| | ||| ||| | | |
Sbjct 1319 TGTACAGATCCTTCAATAATCAGTAGAGAGATCCGGGAAT-T-AAC--ACA-A--G-AG- 1369
Query 1238 GTACCATCAAAACAAGAGGTGAAACAAGAGATTCCAAGAGCTGTTGATGCATCCATGAAC 1297
|| | || ||||| || | |||||||||||||||||| ||||||||
Sbjct 1370 GTG--A--AA--CAAGA----AATC--------CCAAGAGCTGTTGATGCACCCATGAAC 1411
Query 1298 AATGAGTCGTCTTTGGTGAAAACAGAGGAGAA-GTGCTTGTTTATTCTAGAGGACGCAAT 1356
|||||||| |||||||||||||||||| |||| | ||||||||||| |||||||||||||
Sbjct 1412 AATGAGTCATCTTTGGTGAAAACAGAGAAGAAAG-GCTTGTTTATTGTAGAGGACGCAAT 1470
Query 1357 GGAGAGAAACCGCAAGACACCACGGTTTATCTATCTCATGA---T---CATAGGCTTCAT 1410
||||||||||||||||| |||||| |||||||||||||||| | ||||||| |||
Sbjct 1471 GGAGAGAAACCGCAAGAAACCACGATTTATCTATCTCATGAAGATGATCATAGGCAACAT 1530
Query 1411 TCGTCGTATCGGTTTTACTACCCGTCAAA-GATTGAACCCGCTGAAGAAGTTTTGA 1465
| | |||||||||||||||||||||| |||||| |||| |||||||||| |||
Sbjct 1531 -CAT---ATCGGTTTTACTACCCGTCAAAAGATTGATCCCGGTGAAGAAGTTATGA 1582
> AT4G01520.1 | Symbols: anac067, NAC067 | NAC domain containing
protein 67 | chr4:656407-659178 REVERSE LENGTH=909
Length=909
Score = 1075 bits (582), Expect = 0.0
Identities = 802/903 (89%), Gaps = 36/903 (4%)
Strand=Plus/Plus
Query 23 ATGGTGAAAGATCTGATTGGGTATAGATTTAGTCCGACGGGAGAGGAATTGATTAACCAT 82
||| ||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGATGAAAGATCCGACTGGGTATAGATTTAGTCCGACGGGAGAGGAAGTGATAAACCAT 60
Query 83 TACCTGAAGAACAAAAATCTGGGTACAAAAACTTTGCTCGTTGATGAAGCCATTAGCGAG 142
||||| |||||||||| ||||||| || |||| |||||||||||||||||||||||||
Sbjct 61 TACCTAAAGAACAAAATTCTGGGT---AAGACTTGGCTCGTTGATGAAGCCATTAGCGAG 117
Query 143 ATCAACATCTTGAGCCACAAACCCAGCAAGGATTTGCCTAAGTTAGCTAAGATCCAATCG 202
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 ATCAACATCTTGAATCACAAACCCAGCAAGGATTTGCCTAAGTTAGCTAGGATCCAATCG 177
Query 203 GAAGATCTTGAATGGTACTTCTTCTCTCTGATTGAGTACACGAACCGGAAGAAGAATGAA 262
||||||||||| |||||||| ||||||| ||||||||||||||||| ||| |||| ||||
Sbjct 178 GAAGATCTTGAGTGGTACTTTTTCTCTCCGATTGAGTACACGAACCCGAATAAGA-TGAA 236
Query 263 A-TGAAGAGGACTACAGGTACTGGGTTTTGGAAACCTACTGGTGTTGATCGGAAAATTAG 321
| |||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 237 AATGAAGAGGACGACAGGTTCTGGGTTTTGGAAACCTAGTGGTGTTGATCGGAAAATTAG 296
Query 322 GGATAAAAGAGGAAATGGTGTTGTGATCGGTTTTAAGAAGACGCTTGTGTACCATGAAGG 381
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 297 GGATAAAAGAGGAAATGGTGTTGTGATAGGGATTAAGAAGACGCTTGTGTACCATGAAGG 356
Query 382 TAAGGGTCCTAATGGAGTTAGAACTCCTTGGGCTATGCACGAGTATCACATCACTTGCTT 441
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 357 TAAGAGTCCTCATGGAGTTAGAACTCCTTGGGTTATGCACGAGTATCACATCACTTGCTT 416
Query 442 GCCTCATGATAAGAGGAAATATGTTATCTGCCAAGTAAAGTATAAGGGTAAAGCTGCAGA 501
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 417 GCCTCATCATAAGAGGAAATATGTTGTCTGCCAAGTAAAGTATAAGGGTGAAGCTGCAGA 476
Query 502 CATTTCATATGAGCCAAGTCGCTCC--GAT-TC-GAATA-C-TACC---AGAGCGATTAA 552
||||||||||||||||||| ||| | | || || | | |||| | |||||||||
Sbjct 477 AATTTCATATGAGCCAAGTCCCTCTTTGGTATCCGATTCGCATACCGTCATAGCGATTAA 536
Query 553 CAGAGCGGCTGAGCCTGAGCTTCAGGTTGAGCAGCCAGGTAGAGAAAATTTCTTGGGTAT 612
| ||| | || |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 537 CGGAGAACCGGAACCTGAGCTTCAGGTTGAGCAGCCAGGTAAAGAAAATCTCTTGGGTAT 596
Query 613 GTCTTTAGATGATTTG---GAACAAGAGGATCCAAAAACTTGCTTGCAGCCACAAGGTCC 669
|||| ||||||||||| |||| | | || |||| || | | |||||||||||||
Sbjct 597 GTCTGTAGATGATTTGATAGAACCA-ATGAACCAACAAGA-G---G-AGCCACAAGGTCC 650
Query 670 TCACTTAGC-CTTGAATGATGATGAGTTTATCCGTGGATTGAGGCATGTTGATCGAGAAC 728
||||||||| | |||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 651 TCACTTAGCTCC-GAATGATGATGAGTTTATACGTGGATTGAGACATGTTGATCGAGAGC 709
Query 729 AAGTTGAATATTTGTTCGCCAATGAAGAAAACATTGATGGTTTGTCTAT---GAATGACT 785
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 710 CGGTTGAATATTTGTTTGCCAATGAAGAAAACATGGATGGTTTGTCTATTATGAATGACT 769
Query 786 TGAGAATCCCAATGATCGTCCAACAAGAGGATCTC-T-CT----GAGTGGGATGGATTTA 839
||| |||||||||||||| |||||||||||||||| | || |||||||| |||||||
Sbjct 770 TGACAATCCCAATGATCGCCCAACAAGAGGATCTCATTCTCTCTGAGTGGGAGGGATTTA 829
Query 840 AT-GCAGACACGTTTTTCAGCGACAACAACAATAACAACAACCTTAACGTGCATCAACTA 898
| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 830 -TCGCAGCCACCTTTTTCAGCGACAACAACAATAACAATAACCTTAACGTGCATCAACTA 888
Query 899 ACG 901
|||
Sbjct 889 ACG 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5