BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943592
Length=859
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45063.1 | Symbols: | copper ion binding;electron carriers ... 822 0.0
> AT1G45063.1 | Symbols: | copper ion binding;electron carriers
| chr1:17033335-17035105 REVERSE LENGTH=1329
Length=1329
Score = 822 bits (445), Expect = 0.0
Identities = 644/740 (87%), Gaps = 14/740 (2%)
Strand=Plus/Plus
Query 76 TTCTGTTGGGTTGTTGTTCGGCAACGGTCCACAAAGTGGGAGACTCCGATGGATGGGC-C 134
|||| || |||||||||||||| || ||| |||||||||||||||||||||||||| |
Sbjct 275 TTCTCTTCGGTTGTTGTTCGGCCACCGTCTACAAAGTGGGAGACTCCGATGGATGGACTG 334
Query 135 CCTAAGGA--A----GACGACAATTGGACCGACCG-TGAGGAGTTCCACGTGGGAGATTC 187
|| ||||| | | || |||||||||| | | | ||| ||||||||||||||||
Sbjct 335 CC-AAGGACCACCTCTATTACCATTGGACCGA-GGATAAAGAGATCCACGTGGGAGATTC 392
Query 188 CCTGGTCTTTGAATATGATCGTAACTTCAACGATGTCACTCAAGTTTCCGGCGGTTTGGA 247
|| |||| ||||| |||| ||| |||| || ||||| ||||| ||||| ||||||||
Sbjct 393 TTTGATCTTCGAATACGATCACAACCTCAATGACGTCACACAAGTCTCCGGTGGTTTGGA 452
Query 248 GTACGAATTCTGTGACTCTTCTTTCCCTAAAGCCGTCTACAACACAGGCCACGATGTTGT 307
||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 453 ATACGAATTCTGCGACTCTTCTTTTCCTAAAGCCGTCTACAACACAGGACATGATGTCGT 512
Query 308 AACATTAAAGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 367
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 AACCTTCACGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 572
Query 368 GGGACAGAGGCT-GGACGTTCTTGTTACCCATGACCCGTCGAGTCCGATTCCTCCACCA- 425
|||||||||||| || |||| |||| |||||||||||||||||||| ||||| ||||
Sbjct 573 GGGACAGAGGCTTGG-CGTTTTTGTCGTCCATGACCCGTCGAGTCCGAGTCCTCTACCAC 631
Query 426 TCACCGAGCAAGATTCTTCCGTCTGGAAATATCTACAAGGTAGGCGACTCCAAAAGATGG 485
| ||||||||||||| |||| ||| || || |||||||||| || ||||||||||| |||
Sbjct 632 T-ACCGAGCAAGATTATTCCTTCTAGACATGTCTACAAGGTTGGTGACTCCAAAAGTTGG 690
Query 486 AGCGTTTACGACAGTGAGTTCTATTACCAGTGGAGTAAAGAGAAACAATTCCATGTTGGA 545
|||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||| |||
Sbjct 691 GGCGTTTACGACAGTGATTTCTATTACAACTGGAGTAAAGAGAAACAGTTCAATGTCGGA 750
Query 546 GACAGTCTCCTTTTCGAATACAACAACGAAGTCAATGATGTCTTCGAGATCAGCGGCGAC 605
||| |||||||||||||||||||||| |||||||| | ||||| |||||||||||| |||
Sbjct 751 GACGGTCTCCTTTTCGAATACAACAATGAAGTCAACGGTGTCTACGAGATCAGCGGTGAC 810
Query 606 CTTGAATTCCTATACTGCGACCCGATTTCTCCCGTAGCCGTGCACAAGACAGGCCACGAT 665
||||||||| || |||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct 811 CTTGAATTCTTAAACTGCGACCCGACTTCTCCAATAGCCGTGCATAAGACAGGCCACGAT 870
Query 666 CTCATAAAGCTCACCGAACCAGGAATCCATTATTTCATTAGCTCAGAGCCAGGTCACTGT 725
|||| ||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 871 ATCATCAAGCTCACCAAACCAGGAATCCATTATTTCATTAGCTCAGAACCGGGTCACTGT 930
Query 726 GAGGCTGGACTTAAGCTCCAAGTTGTGGTTGGACCAACACCCAATGTTCCAAAGTTGTCA 785
| |||||| |||||||||||||| ||||| ||| |||||| |||||||||||||||||||
Sbjct 931 GGGGCTGGTCTTAAGCTCCAAGTCGTGGTCGGAACAACACTCAATGTTCCAAAGTTGTCA 990
Query 786 CCTTTAGAACGTCTCACAAG 805
|||||||| |||||||||||
Sbjct 991 CCTTTAGAGCGTCTCACAAG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41895278598
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5