BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943595 Length=860 Score E Sequences producing significant alignments: (Bits) Value AT1G45063.1 | Symbols: | copper ion binding;electron carriers ... 822 0.0 > AT1G45063.1 | Symbols: | copper ion binding;electron carriers | chr1:17033335-17035105 REVERSE LENGTH=1329 Length=1329 Score = 822 bits (445), Expect = 0.0 Identities = 645/741 (87%), Gaps = 16/741 (2%) Strand=Plus/Plus Query 77 TTCTGTTGGGTTGTTTTTCGGCAACAGTCCACAAAGTGGGAGACTCCGATGGATGGAC-C 135 |||| || ||||||| |||||| || ||| |||||||||||||||||||||||||||| Sbjct 275 TTCTCTTCGGTTGTTGTTCGGCCACCGTCTACAAAGTGGGAGACTCCGATGGATGGACTG 334 Query 136 CCTAAGGAAGACGAC-A--A-C--TGGACCGACAG-TGAGGAGTTCCACGTGGGAGATTC 188 || ||||| || | | | | |||||||| | | | ||| |||||||||||||||| Sbjct 335 CC-AAGGACCACCTCTATTACCATTGGACCGA-GGATAAAGAGATCCACGTGGGAGATTC 392 Query 189 CCTGATCTTTGAATATGATCGTAACTTCAACGATGTCACTCAAGTTTCCGGCGCTTTGGA 248 ||||||| ||||| |||| ||| |||| || ||||| ||||| ||||| | |||||| Sbjct 393 TTTGATCTTCGAATACGATCACAACCTCAATGACGTCACACAAGTCTCCGGTGGTTTGGA 452 Query 249 GTACGAATTCTGCGACTCTTCTTTCCCTAAAGCCGTCTACAACACAGGCCACGATGTTGT 308 ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| || Sbjct 453 ATACGAATTCTGCGACTCTTCTTTTCCTAAAGCCGTCTACAACACAGGACATGATGTCGT 512 Query 309 AACTTTGAAGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 368 ||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 513 AACCTTCACGGAACCAGGGTCTTACTACTTCATCACCTCAAACCATACTCAATGTACATC 572 Query 369 GGGACAGAGGCT-GGACGTTCTTGTTACCCATGACCCGTCGAGTCCGATTCCTCCACCA- 426 |||||||||||| || |||| |||| |||||||||||||||||||| ||||| |||| Sbjct 573 GGGACAGAGGCTTGG-CGTTTTTGTCGTCCATGACCCGTCGAGTCCGAGTCCTCTACCAC 631 Query 427 TCACCGAGCAAGATTCTTCCGTCTGGAAATATCTACAAGGTAGGCGACTCCAAAAGATGG 486 | ||||||||||||| |||| ||| || || |||||||||| || ||||||||||| ||| Sbjct 632 T-ACCGAGCAAGATTATTCCTTCTAGACATGTCTACAAGGTTGGTGACTCCAAAAGTTGG 690 Query 487 AGCGTTTACGACAGTGAGTTCTATTACCAGTGGAGTAAAGAGAAACAATTCCATGTTGGA 546 |||||||||||||||| ||||||||| | ||||||||||||||||| ||| |||| ||| Sbjct 691 GGCGTTTACGACAGTGATTTCTATTACAACTGGAGTAAAGAGAAACAGTTCAATGTCGGA 750 Query 547 GACAGTCTCCTTTTCGAATACAACAACGAAGTCAATGATGTCTTCGAGATCAGCGGCGAC 606 ||| |||||||||||||||||||||| |||||||| | ||||| |||||||||||| ||| Sbjct 751 GACGGTCTCCTTTTCGAATACAACAATGAAGTCAACGGTGTCTACGAGATCAGCGGTGAC 810 Query 607 CTTGAATTCCTATACTGCGACCCGATTTCTCCCGTAGCCGTGCACAAGACAGGCCACGAT 666 ||||||||| || |||||||||||| |||||| |||||||||| ||||||||||||||| Sbjct 811 CTTGAATTCTTAAACTGCGACCCGACTTCTCCAATAGCCGTGCATAAGACAGGCCACGAT 870 Query 667 CTCATAAAGCTCACCGAACCAGGAATCCATTATTTCATTAGCTCAGAGCCAGGTCACTGT 726 |||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||| Sbjct 871 ATCATCAAGCTCACCAAACCAGGAATCCATTATTTCATTAGCTCAGAACCGGGTCACTGT 930 Query 727 GAGGCTGGACTTAAGCTCCAAGTTGTGGTTGGACCAACAGC-CAATGTTCCAAAGTTGTC 785 | |||||| |||||||||||||| ||||| ||| ||||| | |||||||||||||||||| Sbjct 931 GGGGCTGGTCTTAAGCTCCAAGTCGTGGTCGGAACAACA-CTCAATGTTCCAAAGTTGTC 989 Query 786 ACCTTTAGAACGTCTCACAAG 806 ||||||||| ||||||||||| Sbjct 990 ACCTTTAGAGCGTCTCACAAG 1010 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41945512745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5