BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943596
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01500.1 | Symbols: NGA4 | AP2/B3-like transcriptional facto... 1572 0.0
AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional facto... 233 2e-60
> AT4G01500.1 | Symbols: NGA4 | AP2/B3-like transcriptional factor
family protein | chr4:639247-640940 FORWARD LENGTH=1491
Length=1491
Score = 1572 bits (851), Expect = 0.0
Identities = 982/1044 (94%), Gaps = 13/1044 (1%)
Strand=Plus/Plus
Query 1 GCTTGATACTTATGATGAATATGTCAACGCTGAATTC-TGATCAAGAACTCGCCGATATC 59
||||||||||| |||||||||| ||||| |||| || ||| |||||||||||||| |||
Sbjct 328 GCTTGATACTTTTGATGAATATCTCAACAATGAA-TCTTGACCAAGAACTCGCCGAGATC 386
Query 60 GGAGCTAGCAGTTCCGACAACACCAATTACTTCTACAGCTCGGAGAGAAGAGAGCACATG 119
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 387 AGAGCTAGCAGTTCCGACCACACCAATTACTTCTACAGCTCGGAGAGGAGAGAGCACATG 446
Query 120 TTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGTGATTCCAAAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCGGCTCGTGATTCCAAAG 506
Query 180 CAACATGCAGAGAACTACTTCCCTTTAGAGGGCAATCAAAACGGCACAGTGTTGGATTTC 239
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 507 CAACATGCAGAGAACTTCTTCCCTTTAGAGGACAATCAAAACGGCACAGTGTTGGATTTC 566
Query 240 CAAGACAGAAACGGCAAGATGTGGAGGTTTCGTTACTCGTATTGGAACAGTAGCCAAAGC 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CAAGACAAAAACGGCAAGATGTGGAGGTTTCGTTACTCGTATTGGAACAGTAGCCAAAGC 626
Query 300 TACGTGATGACCAAAGGATGGAGCCGTTTCGTTAAAGAGAAGAAACTCTTCGCCGGAGAC 359
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 627 TACGTGATGACCAAAGGATGGAGCCGTTTCGTCAAGGAGAAGAAACTCTTCGCCGGAGAC 686
Query 360 ACCGTGTCTTTCCACCGTGGCTTCATCCCCGACGATAACGCACCACCGGAGAGACGCCGG 419
||||| |||||| ||||||||| |||||| ||||||||||||| |||||||||||| |||
Sbjct 687 ACCGTCTCTTTCTACCGTGGCTACATCCCTGACGATAACGCACAACCGGAGAGACGACGG 746
Query 420 AAAATAATGTTCATTGATTGGAGGCATAGAGCCGAGATAAACCTCGTACACAACTTTAAC 479
|||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 747 AAAATAATGTTCATCGATTGGAGGCCTAGAGCCGAGATAAACTTCGTACACAACATTAAC 806
Query 480 CAGCATAACTTCATTTTCGGGTCTCCGACATATCCAACGGCTAGGTTTTATCCGGTGACG 539
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 AATCATAACTTCGTTTTCGGGTCTCCGACATATCCAACGGCTAGGTTTTATCCGGTGACG 866
Query 540 CCGGAATATTCCATGCCAAGCCACCGGAGTTTTCCACCGTTTTATCATAACCAATTTCAA 599
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 867 CCGGAATATTCCATGCCAT---ACCGGAGTTTTCCACCGTTTTATCAGAACCAATTTCAA 923
Query 600 GAACGGGAATATTTAGGGTATGGTTATGGTAGAATTGTGAATGGTAATGGAGCGCGTTAC 659
||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||
Sbjct 924 GAACGGGAATATTTAGGGTATGGTTATGGTAGAGTTGTTAATGGTAATGGAGTGCGTTAC 983
Query 660 TACGCAGGATCACCGTTGGATCA---TCATCAGTGGAATCTTGGTAGATCTGAGCCGTTG 716
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 984 TACGCAGGATCACCGTTGGATCAACATCATCAGTGGAATCTTGGTCGATCTGAGCCGTTG 1043
Query 717 GTCTATGACTCAGTTCCTGTTTTTCCAGCGGGGAGGGTACTTCCATCGGCGCCTCCTCAG 776
|| |||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1044 GTTTATGACTCGGTTCCAGTTTTTCCAGCGGGGAGGGTACCTCCGTCGGCGCCTCCTCAG 1103
Query 777 CCGTCGACGACGAAGAAGCTGAGGCTGTTTGGGGTTGACGTGGAGGAGTCTACATCTTCA 836
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1104 CCGTCGACGACGAAGAAGCTGAGGCTGTTTGGGGTTGACGTGGAAGAGTCTTCATCTTCA 1163
Query 837 GGGGAGACACGTGGCGAAATGGGAGTTCCAGGGTACTCTTCGTCGTCTCCGGTTGTGATC 896
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1164 GGGGATACACGTGGCGAAATGGGAGTAGCAGGGTACTCTTCCTCGTCTCCGGTTGTGATC 1223
Query 897 AGAGACGATGATCAATCGTTTGGGAGGTCGCCACGTGGCGAAATGGGTGCATCGTCTTCT 956
||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 1224 AGAGACGATGATCAATCATTTTGGAGGTCGCCACGTGGCGAAATGG---CATCGTCTTCT 1280
Query 957 TCGGCTATGCAGCTAAGTGATGATGAAGAA-ATTAAGAGGAAAGGGAAATCTATAGAGTT 1015
|||||||||||||||||||||||||||||| || |||||||||||||||||| ||||| |
Sbjct 1281 TCGGCTATGCAGCTAAGTGATGATGAAGAATAT-AAGAGGAAAGGGAAATCTTTAGAGCT 1339
Query 1016 TTGAAGATAGaaaaaaaTAAGAAC 1039
|||||||||||| |||||||||||
Sbjct 1340 TTGAAGATAGAATAAAATAAGAAC 1363
> AT1G01030.1 | Symbols: NGA3 | AP2/B3-like transcriptional factor
family protein | chr1:11649-13714 REVERSE LENGTH=1905
Length=1905
Score = 233 bits (126), Expect = 2e-60
Identities = 236/287 (82%), Gaps = 15/287 (5%)
Strand=Plus/Plus
Query 104 GAGAAGAGAGCACATGTTCGACAAAGTGTTGACACCAAGTGACGTCGGTAAACTAAACCG 163
||||| ||| |||||||||||||||||| | |||||||| |||||||| ||||| ||| |
Sbjct 764 GAGAA-AGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTCGGAAAACTCAACAG 822
Query 164 GCTCGTGATTCC-AAAGCAACATGCAGAGAACTACTTCCCTTTAGA------GGGCAATC 216
|||||||| || ||| ||||| || |||| || |||||| |||| ||| |
Sbjct 823 ACTCGTGATCCCTAAA-CAACACGCTGAGAGGTATTTCCCTCTAGACTCCTCAAACAACC 881
Query 217 AAAACGGCACAG-TGTTGGATTTCCAAGACAGAAACGGCAAGATGTGGAGGTTTCGTTAC 275
|||||||||| | | ||| | ||||||||||||||||||||||||||||| || ||||||
Sbjct 882 AAAACGGCAC-GCTTTTGAACTTCCAAGACAGAAACGGCAAGATGTGGAGATTCCGTTAC 940
Query 276 TCGTATTGGAACAGTAGCCAAAGCTACGTGATGACCAAAGGATGGAGCCGTTTCGTTAAA 335
|||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 941 TCGTATTGGAACTCTAGCCAGAGCTACGTTATGACCAAAGGATGGAGCCGTTTCGTCAAA 1000
Query 336 GAGAAGAAA-CTCT-TCGCCGGAGACACCGTGTCTTTCCACCGTGGC 380
||||| ||| ||| | || ||||||| || |||||||| || |||
Sbjct 1001 GAGAA-AAAGCTCGAT-GCAGGAGACATTGTCTCTTTCCAACGAGGC 1045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5