BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943598
Length=800
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01470.1 | Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 | tonoplast... 1120 0.0
> AT4G01470.1 | Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 | tonoplast
intrinsic protein 1;3 | chr4:625092-625850 REVERSE LENGTH=759
Length=759
Score = 1120 bits (606), Expect = 0.0
Identities = 709/760 (93%), Gaps = 2/760 (0%)
Strand=Plus/Plus
Query 21 ATGGCTATCAACAGAATTGCGATTGGAACGCCAGGAGAAGCTAGTCGTCCCGATGCGATT 80
||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGCCTATCAACAGAATTGCGATTGGAACGCCGGGGGAAGCTAGTCGTCCCGATGCGATT 60
Query 81 AGAGCGGCTTTCGCGGAGTTTTTCTCCATGGTTATATTCGTTTTCGCGGGTCAAGGCTCT 140
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AGAGCAGCTTTCGCGGAGTTTTTCTCGATGGTTATATTCGTTTTCGCGGGTCAAGGCTCT 120
Query 141 GGAATGGCTTACGGAAAACTAACTGGAGATGGTCCAGCCACACCTTCCGGGCTCGTGGCC 200
||||||||||| ||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 121 GGAATGGCTTATGGAAAACTAACTGGAGATGGTCCAGCCACACCTGCCGGTCTTGTGGCC 180
Query 201 GCGTCTCTGTCTCATGCGTTTGCGTTGTTTGTGGCGGTTTCCGTTGGTGCAAACGTCTCA 260
|||||| |||||||||||||||||||||| || |||||||||||||| || ||||| |||
Sbjct 181 GCGTCTTTGTCTCATGCGTTTGCGTTGTTCGTTGCGGTTTCCGTTGGAGCTAACGTTTCA 240
Query 261 GGCGGCCACGTGAATCCC-GCTGTTACATTCGGAGCTTTTATAGGTGGTAACATTACATT 319
|| || || ||||| ||| || |||||||| || |||||||| ||||| ||||| || ||
Sbjct 241 GGTGGTCATGTGAA-CCCGGCGGTTACATTTGGGGCTTTTATTGGTGGAAACATAACGTT 299
Query 320 GTTGAGAGCTGTTCTATATTGGATAGCTCAATTACTCGGAGCAGTCGTAGCTTGCTTGTT 379
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GTTGAGAGCTATTCTTTATTGGATCGCTCAATTACTCGGAGCAGTCGTAGCTTGCTTGTT 359
Query 380 GCTCAAGGTAAGCACAGGCGGGATGGAAACAGCAGCGTTTTCGCTCTCCCATGGAGTGAC 439
||||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||
Sbjct 360 GCTCAAGGTAAGCACTGGCGGGATGGAAACGGCTGCGTTTTCGCTATCATATGGAGTGAC 419
Query 440 ACCGTGGAATGCAGTCGTATTCGAGATTGTGATGACGTTTGGGTTAGTTTACACGGTTTA 499
|| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCCCTGGAACGCAGTCGTTTTCGAGATTGTGATGACGTTTGGGTTAGTTTACACGGTTTA 479
Query 500 CGCTACTGCCGTGGATCCCAAGAAAGGTGATATTGGAATCGTTGCTCCTTTAGCGATTGG 559
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 480 CGCTACTGCCGTGGATCCCAAGAAAGGTGATATTGGAATCATTGCGCCTTTGGCGATTGG 539
Query 560 GTTAATCGTTGGAGCTAACATTCTGGTTGGTGGTGCGTTCGATGGTGCATCGATGAACCC 619
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 540 GTTAATCGTTGGAGCTAACATTCTGGTTGGTGGTGCTTTCGACGGTGCATCGATGAACCC 599
Query 620 TGCGGTTTCCTTTGGTCCGGCCGTGGTTAGCTGGACTTGGACGAATCATTGGGTCTACTG 679
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 600 CGCGGTTTCATTTGGTCCGGCCGTGGTTAGCTGGATTTGGACGAATCATTGGGTCTATTG 659
Query 680 GGTTGGTCCTTTTATCGGTGCAGCCATTGCAGCTACTGTTTATGATACTATCTTTATCGG 739
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 GGTTGGTCCTTTTATCGGTGCAGCCATTGCAGCTATTGTTTATGATACTATCTTTATCGG 719
Query 740 TAGTAATGGGCATGAACCACTTCCTTCTAATGATTTCTAA 779
||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TAGTAATGGACATGAACCACTTCCTTCTAATGATTTCTAA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38931463925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5