BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943606
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 992 0.0
> AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:578165-579169
FORWARD LENGTH=1005
Length=1005
Score = 992 bits (537), Expect = 0.0
Identities = 622/664 (94%), Gaps = 1/664 (0%)
Strand=Plus/Plus
Query 57 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCGTCAACGCCGGAATCTTACTCTAA 116
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 176 AGCCAAAGCAGATCACAAGAACGCTCCCTCCGCTTCTTCAACGCCAGAATCTTACTCTAA 235
Query 117 AGGTGGAGGAGGCGGCGGTGGAGGTGCTCTCCGCGCAATCTGCGGCGCGATCTTCACGGT 176
|| || ||||| |||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 236 AGAAGGCGGAGGAGGCGGTGGAGATGCTCGCCGCGCAATCTGCGGCGCGATCTTCACCAT 295
Query 177 CCTCATCTTACTAGGTATCATCGCTTTAATCCTTTGGCTCGTCTACCGTCCACACAAACC 236
||| || ||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 296 CCTTGTCATACTAGGTATCATAGCCTTAATCCTTTGGCTCGTCTACCGTCCACATAAACC 355
Query 237 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTCAACTTCACGGCGCCGCCGTTAAT 296
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 356 ACGTCTCACCGTCGTCGGAGCCGCCATCTACGACCTGAATTTCACAGCGCCGCCGTTAAT 415
Query 297 CTCCACCTCCGTTCAGTTCAGCGTTTTGGCAAGAAACCCTAACCGGAGAGTATCAATTCA 356
||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 416 CTCAACCTCCGTTCAGTTCAGCGTTTTAGCAAGAAACCCTAACCGGAGAGTCTCCATTCA 475
Query 357 CTACGACAAGCTCTCTATGTACGTAACGTACAAAAATCAGATCATAACACCGCCGCTTCC 416
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 CTACGACAAGCTCTCTATGTACGTAACGTACAAAGATCAGATCATAACACCGCCGCTTCC 535
Query 417 GTTACCGCCGCTTCGTTTAGGACATAAATCTACGGTGGTGATAGCTCCGGTGATGGGAGG 476
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 536 ACTACCACCGCTTCGTTTAGGACATAAATCTACGGTTGTGATAGCTCCGGTGATGGGAGG 595
Query 477 CAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCTTACGG 536
||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||
Sbjct 596 CAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCTTACGG 655
Query 537 TGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCGATTAA 596
|||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 656 CGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCGATTAA 715
Query 597 GACTGGACGGTATGGATTTTATGCCAGGTGTGATGTGTGGTTGAGATTTAATCCATCTTC 656
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 716 GACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCATCTTC 775
Query 657 TAATGGAGAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGTCTTAAAT 716
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 776 TAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAGTCTTAA-T 834
Query 717 TTTA 720
||||
Sbjct 835 TTTA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5