BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943611 Length=1683 Score E Sequences producing significant alignments: (Bits) Value AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest 12... 411 1e-113 AT4G01340.1 | Symbols: | CHP-rich zinc finger protein-related ... 185 1e-45 > AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest 12 | chr2:859453-862076 FORWARD LENGTH=2444 Length=2444 Score = 411 bits (222), Expect = 1e-113 Identities = 473/589 (80%), Gaps = 37/589 (6%) Strand=Plus/Plus Query 457 AACTTATATGGAAAAAGAGCAGTAACGATATGGTTAAGTCA-GCTTAAAAAGTCTCTGCC 515 ||| || |||| ||||||||||| ||||||||||| || | ||||||||| || |||| Sbjct 779 AACATAGATGGTAAAAGAGCAGTGACGATATGGTTTGGT-ATACTTAAAAAGACTATGCC 837 Query 516 TTTATCGTCTTCTTTGGCT-CTATCTTTCCTTGCTTGTCACAAAGCTGGA--------AC 566 ||||||| |||||||| | |||||||||||||||||||| |||| ||| | Sbjct 838 TTTATCGAGTTCTTTGG-TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTC 896 Query 567 -ACCCACGGATATAGTTAGATGGGCACGACAAGGAAAGTTTCCGTATCTT-TCTTCTTTT 624 |||||||||||| || |||||||||||| |||||||| |||||||| || |||| |||| Sbjct 897 TACCCACGGATATTGTGAGATGGGCACGAGAAGGAAAGCTTCCGTAT-TTGTCTTGTTTT 955 Query 625 CTCAAGATTCGAGAGCAAATGGGAGA-CAGATCAGCTGCGTGTCCTGTGTCTGTAAGCGT 683 ||| | ||| |||||||||||||||| | |||||||||||||||| ||| ||||| | Sbjct 956 CTCGATATTAGAGAGCAAATGGGAGAGC-GATCAGCTGCGTGTCCGGTGAAAGTAAGTAT 1014 Query 684 GAT-GTTCAAGCCTAGTCAGATTGTTTCTGCTCAGA-GATTAGAAGCTCAAG-TTGCT-T 739 || | | | |||| |||| || |||||||||||| | || ||||| | || | || | Sbjct 1015 AATGGCT-AGGCCTTTTCAGGTTATTTCTGCTCAGATG-TTGGAAGCACGAGCCT-CTGT 1071 Query 740 CCATTGCTGATATC-ATCGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCGTCA 798 |||||||||| | || |||||||||||||||||||||||||||||||||||||| ||| Sbjct 1072 -GATTGCTGATA-CTATTGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCA 1129 Query 799 AACTATCTAGAGCGGTTGTCTATTCCCAAGGAGAAGGTTCTTGATCTGGTC-CGTCTCT- 856 |||||| || ||| ||| |||||||| |||| ||| |||||||||||| | ||||| | Sbjct 1130 AACTATATAAAGCAGTTATCTATTCCTGAGGACAAGATTCTTGATCTGG-CGCGTCT-TA 1187 Query 857 TACACAACTGGTCAATGTCTTCC-GATTTGTATCTATCAAAGAACGTGCTCAGGCTTCCC 915 |||| ||||||||| || || || || || ||| |||| | ||| | || | |||||| Sbjct 1188 TACAGAACTGGTCATTGCCT-CCTGAGTTATATTTATCGACGAATGAGCAGAAGCTTCCT 1246 Query 916 A-CTCGTGTCTATGTCATGTCTATTATTATCGTAGCTATTCGGATGCTTTATAATATCAA 974 | | ||||| | ||||||||||||| | || ||||||||||||||||||||||| || || Sbjct 1247 AGC-CGTGTGTGTGTCATGTCTATTCTGATTGTAGCTATTCGGATGCTTTATAACATAAA 1305 Query 975 TGGTTTTGGTGTATGGGAACAAAGCTTGGG-TTTGCTTGATGCTAGTGA 1022 |||||| ||||| ||||||| || ||||| |||| | |||||||||| Sbjct 1306 TGGTTTGGGTGTGTGGGAACGGAGTTTGGGGTTTG-TCAATGCTAGTGA 1353 Score = 381 bits (206), Expect = 1e-104 Identities = 280/316 (89%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 1328 CACCAGATAATCATAATCACGAAGAGAAATCCAAGGAGAAAGCGATAAGAAGACTAATAA 1387 |||| || |||||| ||||| |||||||| || |||| |||||||| ||||||||| | Sbjct 1763 CACC-GAGAATCATCATCAC-CAGAGAAATTAAAAGAGATAGCGATAAAAAGACTAATTA 1820 Query 1388 CAGACATGAGG-GACAATTTGTTCCAATACATACCGCCTCGTGTGAAGGTAAAGAGACTA 1446 |||||||| || || | |||||| |||||||| |||||||||||||||||||||||| Sbjct 1821 CAGACATG-GGAGATGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTA 1879 Query 1447 GACTATCTTCAATATGTGAGGAAAAATGATGATGGAGCATTGATATACGCGGGTCATGCG 1506 ||||||||||| || ||||||||||| || |||||||||||||||||||||| |||||| Sbjct 1880 GACTATCTTCAGTACGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCA 1939 Query 1507 GATTACTACATTCTTTTACGGGTTTGTGCTATGGTCGCTGAGATTGATGCAAGGAATATG 1566 ||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 1940 GATTACTACATTCTTTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATG 1999 Query 1567 CATAGAAGTGTGTTGAGCTTTGAGAGAAGATTGGCTTGGATCGAGAAAAAGATAGATCAT 1626 |||||| ||||||||||||||||||| |||||||||||||| ||||||| ||||||||| Sbjct 2000 CATAGAGGTGTGTTGAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAG 2059 Query 1627 GTTTTGCATCTAACTC 1642 |||||||||||||||| Sbjct 2060 GTTTTGCATCTAACTC 2075 > AT4G01340.1 | Symbols: | CHP-rich zinc finger protein-related | chr4:554539-556961 FORWARD LENGTH=681 Length=681 Score = 185 bits (100), Expect = 1e-45 Identities = 117/125 (94%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 1107 TGAAAAGGATCTTTTGTCATATTTATTGCATGGGAAAAACGAGATCTTTGCTGGCTTAGA 1166 |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||| Sbjct 453 TGAAAAGGATCTTTTGTCATATTTGTTGCACGGGAAACACGAGATCTTTGCTGGGTTAGA 512 Query 1167 -AGAAGCATCAGCTGATGACACATACAGAACTGTTGATAATCTGTGGAATAGTTACCCGA 1225 | |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 513 TA-AAGCATCAGCTGATGACACATACAGATCTGTTAATAATCTGTGGAATAGTTACCCGA 571 Query 1226 AAGAC 1230 ||||| Sbjct 572 AAGAC 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83182303065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5