BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943611
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest 12... 411 1e-113
AT4G01340.1 | Symbols: | CHP-rich zinc finger protein-related ... 185 1e-45
> AT2G02955.1 | Symbols: MEE12 | maternal effect embryo arrest
12 | chr2:859453-862076 FORWARD LENGTH=2444
Length=2444
Score = 411 bits (222), Expect = 1e-113
Identities = 473/589 (80%), Gaps = 37/589 (6%)
Strand=Plus/Plus
Query 457 AACTTATATGGAAAAAGAGCAGTAACGATATGGTTAAGTCA-GCTTAAAAAGTCTCTGCC 515
||| || |||| ||||||||||| ||||||||||| || | ||||||||| || ||||
Sbjct 779 AACATAGATGGTAAAAGAGCAGTGACGATATGGTTTGGT-ATACTTAAAAAGACTATGCC 837
Query 516 TTTATCGTCTTCTTTGGCT-CTATCTTTCCTTGCTTGTCACAAAGCTGGA--------AC 566
||||||| |||||||| | |||||||||||||||||||| |||| ||| |
Sbjct 838 TTTATCGAGTTCTTTGG-TGATATCTTTCCTTGCTTGTCACCAAGCGGGAGCGCCTGTTC 896
Query 567 -ACCCACGGATATAGTTAGATGGGCACGACAAGGAAAGTTTCCGTATCTT-TCTTCTTTT 624
|||||||||||| || |||||||||||| |||||||| |||||||| || |||| ||||
Sbjct 897 TACCCACGGATATTGTGAGATGGGCACGAGAAGGAAAGCTTCCGTAT-TTGTCTTGTTTT 955
Query 625 CTCAAGATTCGAGAGCAAATGGGAGA-CAGATCAGCTGCGTGTCCTGTGTCTGTAAGCGT 683
||| | ||| |||||||||||||||| | |||||||||||||||| ||| ||||| |
Sbjct 956 CTCGATATTAGAGAGCAAATGGGAGAGC-GATCAGCTGCGTGTCCGGTGAAAGTAAGTAT 1014
Query 684 GAT-GTTCAAGCCTAGTCAGATTGTTTCTGCTCAGA-GATTAGAAGCTCAAG-TTGCT-T 739
|| | | | |||| |||| || |||||||||||| | || ||||| | || | || |
Sbjct 1015 AATGGCT-AGGCCTTTTCAGGTTATTTCTGCTCAGATG-TTGGAAGCACGAGCCT-CTGT 1071
Query 740 CCATTGCTGATATC-ATCGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCGTCA 798
|||||||||| | || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1072 -GATTGCTGATA-CTATTGGTTTGCCTTTGCCTCCTGTGAATTTCTATGGTATAGCTTCA 1129
Query 799 AACTATCTAGAGCGGTTGTCTATTCCCAAGGAGAAGGTTCTTGATCTGGTC-CGTCTCT- 856
|||||| || ||| ||| |||||||| |||| ||| |||||||||||| | ||||| |
Sbjct 1130 AACTATATAAAGCAGTTATCTATTCCTGAGGACAAGATTCTTGATCTGG-CGCGTCT-TA 1187
Query 857 TACACAACTGGTCAATGTCTTCC-GATTTGTATCTATCAAAGAACGTGCTCAGGCTTCCC 915
|||| ||||||||| || || || || || ||| |||| | ||| | || | ||||||
Sbjct 1188 TACAGAACTGGTCATTGCCT-CCTGAGTTATATTTATCGACGAATGAGCAGAAGCTTCCT 1246
Query 916 A-CTCGTGTCTATGTCATGTCTATTATTATCGTAGCTATTCGGATGCTTTATAATATCAA 974
| | ||||| | ||||||||||||| | || ||||||||||||||||||||||| || ||
Sbjct 1247 AGC-CGTGTGTGTGTCATGTCTATTCTGATTGTAGCTATTCGGATGCTTTATAACATAAA 1305
Query 975 TGGTTTTGGTGTATGGGAACAAAGCTTGGG-TTTGCTTGATGCTAGTGA 1022
|||||| ||||| ||||||| || ||||| |||| | ||||||||||
Sbjct 1306 TGGTTTGGGTGTGTGGGAACGGAGTTTGGGGTTTG-TCAATGCTAGTGA 1353
Score = 381 bits (206), Expect = 1e-104
Identities = 280/316 (89%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 1328 CACCAGATAATCATAATCACGAAGAGAAATCCAAGGAGAAAGCGATAAGAAGACTAATAA 1387
|||| || |||||| ||||| |||||||| || |||| |||||||| ||||||||| |
Sbjct 1763 CACC-GAGAATCATCATCAC-CAGAGAAATTAAAAGAGATAGCGATAAAAAGACTAATTA 1820
Query 1388 CAGACATGAGG-GACAATTTGTTCCAATACATACCGCCTCGTGTGAAGGTAAAGAGACTA 1446
|||||||| || || | |||||| |||||||| ||||||||||||||||||||||||
Sbjct 1821 CAGACATG-GGAGATGACTTGTTCTGTTACATACCACCTCGTGTGAAGGTAAAGAGACTA 1879
Query 1447 GACTATCTTCAATATGTGAGGAAAAATGATGATGGAGCATTGATATACGCGGGTCATGCG 1506
||||||||||| || ||||||||||| || |||||||||||||||||||||| ||||||
Sbjct 1880 GACTATCTTCAGTACGTGAGGAAAAAAGAAGATGGAGCATTGATATACGCGGCTCATGCA 1939
Query 1507 GATTACTACATTCTTTTACGGGTTTGTGCTATGGTCGCTGAGATTGATGCAAGGAATATG 1566
||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 1940 GATTACTACATTCTTTTGCGGGTTTGTGCTAAGGTAGCTGAGATTGATGTGAGGAATATG 1999
Query 1567 CATAGAAGTGTGTTGAGCTTTGAGAGAAGATTGGCTTGGATCGAGAAAAAGATAGATCAT 1626
|||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 2000 CATAGAGGTGTGTTGAGCTTTGAGAGGAGATTGGCTTGGATTGAGAAAAGGATAGATCAG 2059
Query 1627 GTTTTGCATCTAACTC 1642
||||||||||||||||
Sbjct 2060 GTTTTGCATCTAACTC 2075
> AT4G01340.1 | Symbols: | CHP-rich zinc finger protein-related
| chr4:554539-556961 FORWARD LENGTH=681
Length=681
Score = 185 bits (100), Expect = 1e-45
Identities = 117/125 (94%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 1107 TGAAAAGGATCTTTTGTCATATTTATTGCATGGGAAAAACGAGATCTTTGCTGGCTTAGA 1166
|||||||||||||||||||||||| ||||| |||||| |||||||||||||||| |||||
Sbjct 453 TGAAAAGGATCTTTTGTCATATTTGTTGCACGGGAAACACGAGATCTTTGCTGGGTTAGA 512
Query 1167 -AGAAGCATCAGCTGATGACACATACAGAACTGTTGATAATCTGTGGAATAGTTACCCGA 1225
| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 513 TA-AAGCATCAGCTGATGACACATACAGATCTGTTAATAATCTGTGGAATAGTTACCCGA 571
Query 1226 AAGAC 1230
|||||
Sbjct 572 AAGAC 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5