BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943622
Length=1483
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01240.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 2211 0.0
> AT4G01240.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:517795-521972 REVERSE
LENGTH=1980
Length=1980
Score = 2211 bits (1197), Expect = 0.0
Identities = 1311/1367 (96%), Gaps = 3/1367 (0%)
Strand=Plus/Plus
Query 95 GTTTGGCTTTTCTTATCTCAGTAGCTACATTAGCTAAGTTCAATTACATCACACCACTAC 154
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 617 GTTTGGCTTTTCTTATCTCAGTAGCTACATTAGCTAAGTTCAACTACATCACTCCACTAC 676
Query 155 GCTTCTCTGATCGGTTCTGTAACTATCATGGAAGCTTTGACGGCGACAACTACAATATCG 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 677 GCTTCTCTGATCGGTTCTGTAACTATCATGGAAGCTTTGACGGCGACAACTACAACATCG 736
Query 215 GAAGCCAAATGAGAAAGACAATCGAAACCGCCATTTTTAAAATCCACCAAGAAATGGATG 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GAAGCCAAATGAGAAAGACAATCGAAACCGCCATTTTTAAAATCCACCAAGAAATGGATG 796
Query 275 ATCTCAAGGCTTTAGAAGCCAACTCTTCTTCTTCTTCTCCATCATCTGATTCATCAGCTT 334
||||||||||||||||||| || ||||||| || ||||||| |||| |||||||||||
Sbjct 797 ATCTCAAGGCTTTAGAAGCTAA---TTCTTCTACTCCTCCATCCTCTGTTTCATCAGCTT 853
Query 335 CTGGATCCATGTTTAGGCATGTAGCTTTTCTAGCGGATGTTCTTTCGCTAGTTCAGTCGG 394
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 854 CAGGATCCATGTTTAGGCATGTAGCTTTTCTTGCGGATGTTCTTTCGCTAGTTCAGTCGG 913
Query 395 TTCATATGGAATTGCCTTCTTTTGAAGAGAGATTTGTAGCGGATCATCCGTTGAAGCAGC 454
||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||
Sbjct 914 TTCATATGGAATTGCCTTCGTTCGAAGAGAGATCCGTAGCAGATCATCCGTTGAAGCAGC 973
Query 455 AGAACGGTGACCCGGGGGAGCATTTTATGAGAGAAGAGATAAAGAAGTACATAAAGATCA 514
|||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AGAAAGGTGACCCTGGTGAGCATTTTATGAGAGAAGAGATAAAGAAGTACATAAAGATCA 1033
Query 515 AACCAAACCGGCTTGGGAAGCAGAACTTCATGGGAGCTAACGGAACTTTCACCTCGATCG 574
|||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1034 AACCTAACCGGCTCGGGAAGCAGAATTTCATGGGAGCTAACGGAACATTCACCTCGATCG 1093
Query 575 GGCATGCTTGTTTTGCGATGAAGGAAGATCTAGAAGAGTATATGGACTATGATGTTGGGG 634
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1094 GGCACGCTTGTTTTGCGATGAAGAAAGATCTAGAAGAGTATATGGACTATGATGTTGGAG 1153
Query 635 AAATCTGCAACGATGATTGGAGGTTAGCTCAGAAGCTTATGGTTCACGGATGCGATCCGT 694
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1154 AAATCTGCAATGATGATTGGAGATTAGCTCAGAAGCTTATGGTTCATGGATGCGATCCGT 1213
Query 695 TGCCTAGAAGACGGTGCTTCTCCCGTGGCCCGCAGTTATACCACAAACCGTTTCCAATCA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TGCCTAGAAGACGGTGCTTCTCCCGTGGCCCGCAGTTATACCACAAACCGTTTCCAATCA 1273
Query 755 ACGAGTCTTTATGGAAGCTTCCGGATAATCGGAATGTAAGATGGGGACAGTATAAGTGCA 814
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1274 ACGAGTCTTTATGGAAGCTTCCGGATAATCGGAATGTGAGATGGGGACAGTATAAGTGCA 1333
Query 815 AGAACTTCGCTTGCTTAGCTAGCAACACAATAGCACGAAAAGGGTTCTTTAAATGCACTG 874
||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1334 AGAACTTTGCTTGCCTAGCAAGCAACACAACAGCACGAAAAGGGTTCTTTAAATGCACTG 1393
Query 875 ATTGCTTCAACCTCACGTACCACGAATCGCCGAGATGGCTTAACCGAGGCGAAGTTGATC 934
||||||||||||||||| |||||||||| |||||||||||||||||||||||| | ||||
Sbjct 1394 ATTGCTTCAACCTCACGCACCACGAATCTCCGAGATGGCTTAACCGAGGCGAAATCGATC 1453
Query 935 TTGAGACGAACCAAACTGCGGATTTCTCGATAGCTGAAGTACTAGAGATTAAACCGGGAG 994
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1454 CTGAGACGAACCAAACTGCGGATTTCTCGATAGCTGAAGTACTCGAGATTAAACCGGGAG 1513
Query 995 AGATTAGAATCGGATTGGATTTCAGCATTGGCACAGGAACTTTCGCAGCGAGGATGAGAG 1054
|||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1514 AGATTAGAATCGGACTGGATTTCAGCATTGGCACTGGAACTTTCGCAGCAAGAATGAGAG 1573
Query 1055 AACAGAACGTCACGATTGTATCAGCAACAATCAACCTCGGCGCTCCATTCAACGAGATGA 1114
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1574 AACAGAACGTCACGATTGTATCAGCAACAATCAACCTTGGCGCTCCATTCAACGAGATGA 1633
Query 1115 TCGCACTGCGCGGTTTAGTCCCGTTGTACTTAACTGTGAACCAACGGTTACCGTTCTTCG 1174
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1634 TCGCTCTGCGCGGTTTAGTCCCGTTGTACTTAACCGTGAACCAACGGTTACCGTTCTTCG 1693
Query 1175 ACAGCACTCTTGATATGATTCACACGACGAGGTTTCTCGATGGATGGATTGATCTAATAC 1234
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 ACAGCACGCTTGATATGATTCACACGACGAGGTTTCTCGATGGATGGATTGATCTAATAC 1753
Query 1235 TTCTTGATTTCGTGCTGTATGACTGGGACAGGGTTTTAAGACCAGGGGGATTGTTGTGGA 1294
|||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 1754 TTCTTGATTTCGTGCTGTTTGATTGGGACAGGGTTTTAAGGCCAGGTGGATTGTTGTGGA 1813
Query 1295 TCGATGGTTTCTTCTGTCTGAAAGAAGATTTGAGTGATTACATGGAAGCGTTTAAAGCGT 1354
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1814 TCGATGGTTTCTTTTGTCTGAAAGAAGATGTGAGTGATTACATGGAAGCGTTTAAAGCGT 1873
Query 1355 TGAGGTATAGGAAACATAAGTGGGTTGTGGTACCTAAGAAAGATAAAGATGATAAAGAAG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 TGAGGTATAGGAAACATAAGTGGGTTGTGGTACCTAAGAAAGATAAAGATGATAAAGAAG 1933
Query 1415 TTTTCTTCTCTGCTGTGTTAGAGAAACCTCCAAGACCCTTTAGATGA 1461
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 TTTTCTTCTCTGCTGTGTTAGAGAAACCTCCAAGACCCTTTAGATGA 1980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73142194065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5