BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943624
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01220.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 1653 0.0
AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransf... 1003 0.0
AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransf... 859 0.0
> AT4G01220.1 | Symbols: | Nucleotide-diphospho-sugar transferase
family protein | chr4:513213-515853 REVERSE LENGTH=1506
Length=1506
Score = 1653 bits (895), Expect = 0.0
Identities = 1041/1110 (94%), Gaps = 16/1110 (1%)
Strand=Plus/Plus
Query 14 aaaaaaaaTGGCGCAGCAAAAGTTTCTTCACCAGCG-----TCC---A---ATCCA-AAA 61
|||||||||||||||||||||||| ||||||||||| ||| | || || |||
Sbjct 199 AAAAAAAATGGCGCAGCAAAAGTTCCTTCACCAGCGACCAATCCAAAACCCATTCACAAA 258
Query 62 CCCATTCTCTTCCTCTCCTCTTTCTAATTCTTCAATCTCAAATCGACCAATTTCTCTCCT 121
|||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||| ||
Sbjct 259 CCCATTCTCTTCTTCTCCTCTTTCCACTTCTTCAATCTCAAATCGTCCAATCTCTCTACT 318
Query 122 CAGCCGCAACGGTCTCCTCCTCCTTCTCGCTCTCCTCGTTATCCTCGGTGTATTCTTACC 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 319 CAGCCGCAACGGTCTCCTCCTCCTTCTCGCTCTCCTCGTTATCCTCGGCGTATTCTTACC 378
Query 182 CTGGGCAGGATCTCCCTTATTCCCGTTTCCAAACAGACTCTCTTCTTCTCAATCCAAATG 241
||||||||||||||| |||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 379 CTGGGCAGGATCTCCTTTATTCCCGTCTCCAAACAAACTCTCTCCTTCTCAATCCAAATG 438
Query 242 GCGCGACTATTCCCTCCCTCAAGCCGTCAAGTTCGTCGCTAAGAACGGAACTGTGATCGT 301
|||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 439 GCGCGACTATTCCCTCCCTCAAGCTGTCAAATTCGTAGCTAAGAACGGGACTGTGATCGT 498
Query 302 CTGCGCCGTGAGCTACCCATACTTGCCTTTTCTCAACAATTGGTTGATTAGTGTTTCTAG 361
|||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 499 ATGCGCCGTTAGCTATCCTTACTTGCCGTTTCTCAACAATTGGTTGATTAGTGTTTCTAG 558
Query 362 ACAGAAGCATCAGGATCAAGTTCTCGTTATCGCTGAGGATTACGCTACTCTCTATAAGGT 421
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 559 ACAGAAGCATCAGGATCAAGTTCTCGTCATCGCTGAGGATTACGCTACTCTCTACAAAGT 618
Query 422 TAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGTTAGATTCTCAGACCGC 481
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 619 TAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGCTCGATTCTCAGACCGC 678
Query 482 TCATAAATTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGGAGGCCGCAACATCTCTT 541
||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 679 TCACAAATTCGGTTCTCAGGGATTCTTCAATTTCACAGCACGGAGGCCGCAACATCTCTT 738
Query 542 GGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGTCTGGTTGCA 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 739 GGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGGTTGCA 798
Query 602 AGATCCGTTTCTGTATTTGGAGGGAAAGCACGATGCGTACTTCATGGATGATATGACTGC 661
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 799 AGATCCGTTTCAGTATTTAGAGGGAAAGCACGATGCTTACTTCATGGATGATATGACTGC 858
Query 662 GATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAGGGAAGGACTTA 721
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 859 AATTAAGCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAAGGAAGGACTTA 918
Query 722 TATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGATGGGGCAAAACTTCTCATGAAGAA 781
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 919 TATTTGTAGCTGTATGATTTTCTTGCGTCCCACTAATGGCGCAAAACTTCTCATGAAGAA 978
Query 782 ATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCC 841
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 979 ATGGATCGAGGAGCTTGAAACGCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCC 1038
Query 842 TGGTTTTAACTGGGCACTTAACAAAACAGCTCATCTGGTGGATCTCTACTTGCTATCTCA 901
||||||||||||||||||||||||||||||| ||| ||||||| | |||||||| || ||
Sbjct 1039 TGGTTTTAACTGGGCACTTAACAAAACAGCTAATCAGGTGGATATGTACTTGCTTTCGCA 1098
Query 902 GGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GGCAGCTTTCCCAACAGGAGGATTGTATTTCAAGAACAAAACATGGGTTAAAGAAACAAA 1158
Query 962 GGGAAAACATGTC-ATTATCCACAATAACTACATTGTCGGTTTTGAAAAGAAGATCAAAC 1020
||||||||||| | || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1159 GGGAAAACATG-CGATAATCCACAATAACTACATAGTCGGTTTTGAGAAGAAGATCAAAC 1217
Query 1021 GTTTCCGTGACTTTAATCTATGGCTAGTCGATGACCATGCTTCCGAGTCTCCATTAGGGA 1080
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1218 GTTTCCGTGACTTTAATCTATGGCTAGTCGATGATCATGCTTCCGAGTCTCCTTTAGGGA 1277
Query 1081 AATTAGAGTAAAT-CCGAATGGCaaaaaaa 1109
||||||||||||| || ||||||| |||||
Sbjct 1278 AATTAGAGTAAATTCC-AATGGCAGAAAAA 1306
> AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransferase
1 | chr4:764514-766865 FORWARD LENGTH=1405
Length=1405
Score = 1003 bits (543), Expect = 0.0
Identities = 914/1086 (84%), Gaps = 54/1086 (5%)
Strand=Plus/Plus
Query 64 CATTCTCTTCCTCTCCTCTTTCTAATTCTTCAATCTCAAATCGACCAATTTCTCTCCTCA 123
||||||||||||||||| |||| |||||||||||||| | || || || |||||||| |
Sbjct 85 CATTCTCTTCCTCTCCTAGTTCTTATTCTTCAATCTCAGACCGTCCCATCTCTCTCCTTA 144
Query 124 GCCGCAACGGTCTCCT-C--CTCCTTCTCGCTCTCCTCGTTATCCTCGGTGTATTCTTAC 180
|||||||||||||||| | ||||||||||||||| || | ||||||||||| |||| |
Sbjct 145 GCCGCAACGGTCTCCTCCTTCTCCTTCTCGCTCTCGTCCTGCTCCTCGGTGTACTCTTGC 204
Query 181 CCTGGGCAGGATCTCCCTTATTCCCGTTTCCAAACAGAC--TC-TCTTC----T-----T 228
||||| |||||||||||||||||| ||||||||| |||| || ||||| | |
Sbjct 205 CCTGGCCAGGATCTCCCTTATTCCTGTTTCCAAATAGACTTTCTTCTTCTTTGTCACCGT 264
Query 229 CT---CAATCCAAATGGCGCGACTATTCCCTCCCTCAAGCCGTC-AAGTTCGTCGCTAAG 284
|| || |||||||||||||||||| |||| ||| || || | | |||||| || |||
Sbjct 265 CTCCGCAGTCCAAATGGCGCGACTATACCCTTGCTC-AGGCGGCTAGGTTCGTGGCCAAG 323
Query 285 AACGGAACTGTGATCGTCTGCGCCGTGAGCTAC-CCATACTTGCCTTTTCTCAACAATTG 343
|| || |||||||| |||||||||||||||| | |||| |||||||||||||||||| ||
Sbjct 324 AATGGCACTGTGATAGTCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTCAACAACTG 382
Query 344 GTTGATTAGTGTTTCTAGACAGAAGCATCAGGATC-AAGTTCTCGTTATCGCTGAGGATT 402
||||||||||||||||||||| |||||||| || | |||| ||||| |||||||||||||
Sbjct 383 GTTGATTAGTGTTTCTAGACAAAAGCATCAAGA-CAAAGTCCTCGTGATCGCTGAGGATT 441
Query 403 ACGCTACTCTCTATAAGGTTAACGAGAAATGGCCTGGTCACGCCGTTCTCATTCCTCCGG 462
|| |||||| ||||| || |||||||| |||||||| ||||||||||| |||||||| |
Sbjct 442 ACATTACTCTGTATAAAGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAG 501
Query 463 CGTTAGATTCTCAGACCGCTCA-T-AAATTCGGTTCCCAGGGTTTCTTCAATTTCACAGC 520
|| | |||||| | |||| || | | ||||||||||||||||||||||||||||||||
Sbjct 502 CGCTCGATTCTAAAACCG--CATTCAGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGC 559
Query 521 TCGGAGGCCGCAACATCTCTTGGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGA 580
||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 560 TCGAAGGCCGCAACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGA 619
Query 581 TGTTGATATGGTCTGGTTGCAAGATCCGTTTCTGTATTTGGAGGGAAAGC-ACGATGCGT 639
|||||||||||| |||||||||||||| ||||||||||||||||||| || | || ||||
Sbjct 620 TGTTGATATGGTTTGGTTGCAAGATCCATTTCTGTATTTGGAGGGAA-GCCATGACGCGT 678
Query 640 ACTTCATGGATGATATGACTGCGATTAA-GCCTTTGGATCACTCTCATGATTTACCACCT 698
| |||| ||||| ||| || | | ||| ||||||| ||||||||||||||||||||| |
Sbjct 679 ATTTCACCGATGACATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACAT 737
Query 699 CCGGGTAAAAAGGGA-AGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGA 757
|||| | ||| ||| || |||||||| |||||||| ||||||| |||||| || || ||
Sbjct 738 CCGGATCGAAACGGAGAG-ACTTATATATGTAGCTGCATGATTTACTTGCGACCTAC-GA 795
Query 758 -TGGGGCAAAACTTCTCATGAAGAAATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCA 816
||| ||||| ||||| ||||||||||||| |||||| ||| || ||||| |||||||
Sbjct 796 ATGGTGCAAAGCTTCTAATGAAGAAATGGAGTGAGGAACTTCAATCCCAAGCTTGGTCT- 854
Query 817 GAG-CTAA--G----AAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACA 869
|| | | | ||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 855 GAATCCATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACA 914
Query 870 GCTCATCTGGTGGATCTCTACTTGCTATCTCAGGCAGCTTTCCCAACAGGAGGATTGTAT 929
||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 915 GCTCATCAAGTGGATCTCTACTTGCTTTCTCAAGTAGCTTTCCCAACAGGAGGATTGTAC 974
Query 930 TTCAAGAACAAAACATGGGTTAAAGAAACAAAGGGAAAACATGTCATTA-TCCACAATAA 988
||||||||| | |||||||| |||| |||||||| ||||||||||| | ||||||||||
Sbjct 975 TTCAAGAACGAGGCATGGGTTCAAGAGACAAAGGGGAAACATGTCAT-AGTCCACAATAA 1033
Query 989 CTACATTGTCGGTTTTGAAAAGAAGATCAAACGTTTCCGTGACTTTAA--TCTATGGCTA 1046
||||||| |||||| || | ||| || |||||||||| || || | |||||||||
Sbjct 1034 CTACATTATCGGTTACGACAGGAAAATGAAACGTTTCCAAGA-TT-ACGGTCTATGGCTT 1091
Query 1047 GTCGATGACCATGCT-TCCGAGTCTCCATTAGGGAAATTAGAGTAAA-TCCGAATGGCaa 1104
|||||||| || ||| | |||||||||||||||||||||||||||| || ||||||| |
Sbjct 1092 GTCGATGATCACGCTCTT-GAGTCTCCATTAGGGAAATTAGAGTAAACTC-GAATGGCTA 1149
Query 1105 aaaaaa 1110
|| |||
Sbjct 1150 AAGAAA 1155
> AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransferase
2 | chr4:756363-758590 FORWARD LENGTH=1501
Length=1501
Score = 859 bits (465), Expect = 0.0
Identities = 758/895 (85%), Gaps = 38/895 (4%)
Strand=Plus/Plus
Query 238 AATGGCGCGACTATTCCCTCCCTCAAGCCGTC-AAGTTCGTCGCTAAGAACGGAACTGTG 296
||||||| ||||| |||| |||| || | | ||||| ||||| | |||||| ||||||
Sbjct 416 AATGGCGTAACTATACCCTTGCTCAGGCAG-CTAAGTTTGTCGCCACGAACGGCACTGTG 474
Query 297 ATCGTCTGCGCCGTGAGCTAC-CCATACTTGCCTTTTCTCAACAATTGGTTGATTAGTGT 355
||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||
Sbjct 475 ATCGTCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGT 533
Query 356 TTCTAGACAGAAGCATCAGGATCAAGTTCTCGTTATCGCTGAGGATTACGCTACTCTCTA 415
|||||||||||||||||| || |||| || || ||||||||||||||| |||||| ||
Sbjct 534 TTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTACTCTGTA 593
Query 416 TAAGGTTAACGAGAAA-TGGCCTGGTCACGCCGTTCTCATTCCTCCGGCGTTAGATTCTC 474
||| || ||||| ||| |||||||| ||||||||||| |||||||| ||| | ||||||
Sbjct 594 TAAAGTCAACGA-AAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTA 652
Query 475 AGACCGCTCATA-A-ATTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGGAGGCCGCA 532
| |||| |||| | ||||||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 653 AAACCG--CATACAGTTTCGGTTCCCAGGGTTTCTTCAACTTCACAGCTCGAAGGCCACA 710
Query 533 ACATCTCTTGGAAATTTTGGAGTTAGGTTACAATGTTATGTACAACGATGTTGATATGGT 592
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 711 ACATCTCTTGCAAATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGT 770
Query 593 CTGGTTGCAAGATCCGTTTCTGTATTTGGAGGGAAAGC-ACGATGCGTACTTCATGGATG 651
|||||||||||||| |||| |||||||||||||| || | || |||||||| | |||||
Sbjct 771 TTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAA-GCCATGACGCGTACTTTACGGATG 829
Query 652 ATATGACTGCGATTAA-GCCTTTGGATCACTCTCATGATTTACCACCTCCGGGTAAAAAG 710
||||| || | | ||| ||||||| |||||||||||||||||||| | |||| | ||||
Sbjct 830 ATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGATCAAAAC 888
Query 711 GGA-AGGACTTATATTTGTAGCTGTATGATTTTCTTGCGTCCCACTGA-TGGGGCAAAAC 768
||| || |||||||| |||||||| ||||||| |||||| ||||| || ||| ||||| |
Sbjct 889 GGAGAG-ACTTATATATGTAGCTGCATGATTTACTTGCGACCCAC-GAATGGTGCAAAGC 946
Query 769 TTCTCATGAAGAAATGGATTGAGGAGCTTGAAACCCAACCTTGGTCCAGAG-CTAA--G- 824
|||| ||||||||||||| |||||| ||| | ||||| ||||||| ||| | | |
Sbjct 947 TTCTAATGAAGAAATGGAGTGAGGAACTTCAGTCCCAAGCTTGGTCT-GAGTCCATCCGT 1005
Query 825 ---AAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACAGCTCATCTGGTG 881
||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||
Sbjct 1006 TTTAAAGCAAATGATCAGCCTGCTTTTAACTTGGCACTTAACAAAACAGCCCATCAAGTG 1065
Query 882 GATCTCTACTTGCTATCTCAGGCAGCTTTCCCAACAGGAGGATTGTATTTCAA-GAA-CA 939
|||||||||||||| ||||||| |||||| ||||||||||||||||||||||| || |
Sbjct 1066 GATCTCTACTTGCTTTCTCAGGTAGCTTTTCCAACAGGAGGATTGTATTTCAATGATGCG 1125
Query 940 AAACATGGGTTAAAGAAACAAAGGGAAAACATGTCATTA-TCCACAATAACTACATTGTC 998
||||||||||||| |||||||| ||||||||||| | ||||||||||||||||| ||
Sbjct 1126 G--CATGGGTTAAAGAGACAAAGGGGAAACATGTCAT-AGTCCACAATAACTACATTATC 1182
Query 999 GGTTTTGAAAAGAAGATCAAACGTTTCCGTGACTT-TAATCTATGGCTAGTCGATGACCA 1057
|||| || | ||| || | ||| |||| || || | |||||||||||||||||| ||
Sbjct 1183 GGTTACGATAGGAAAATGAGACGGTTCCAAGA-TTATGGTCTATGGCTAGTCGATGATCA 1241
Query 1058 TGCT-TCCGAGTCTCCATTAGGGAAATTAG-AGTAAATCCGAATGGCaaaaaaaa 1110
|||| || |||||||||||||||||||| | ||||||| |||||||| ||| |||
Sbjct 1242 TGCTCTC-GAGTCTCCATTAGGGAAATT-GCAGTAAATTCGAATGGCTAAAGAAA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5