BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943626
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01200.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1288 0.0
> AT4G01200.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr4:506511-507626 REVERSE LENGTH=1116
Length=1116
Score = 1288 bits (697), Expect = 0.0
Identities = 776/812 (96%), Gaps = 13/812 (2%)
Strand=Plus/Plus
Query 3 AACGAAGAAAGAGAGAAGATGGAGGAGACGCACGTTCTTGAGATCAATCTCATCTCTGCG 62
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 74 AACAAAGAAAGAGAGAAGATGGAGGAGACGCAAGTTCTTGAGATCAATCTCATCTCTGCG 133
Query 63 CAAGGACTTAAAGAACCGACGGGAAAGCTCCGGCGATTGCAGACTTACGCATCCGTCTGG 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CAAGGACTTAAAGAACCGACGGGAAAGCTCCGGCGATTGCAGACTTACGCATCCGTCTGG 193
Query 123 GTTGATTCTTCCAACAAACTCCGGACTCGAATTGATCGGATCGGCTCTGAGAATCCGATC 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GTTGATTCTTCCAGCAAACTCCGGACTCGAATTGATCGGATCGGCTCTGAGAATCCGATC 253
Query 183 TGGAACGACAAATTCGTTTTCCAGGTCTCGCCGGAGTTTCTATCTAGCGAAACTTCTGGC 242
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 254 TGGAACGACAAATTCGTTTTCCAGGTATCGCCGGAGTTTCTATCTAGCGAAACTTCTGGT 313
Query 243 GTTTCAATCGAGATCTATGCCGTTGGTTACTTGCGAGATCATCAGATCGGAACTGTTCGC 302
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 GTTTCAATCGAGATCTACGCCGTTGGTTACTTGCGAGATCATCTGATCGGAACTGTTCGC 373
Query 303 TTCCTCGTGAGTAACTTCCTCCCAACCGCCGCCGTGAAAGTTCCGTCTCTCGTCGCACTT 362
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 374 TTCCTCGTGAGTAACTTCCTCCCAACCGCCGCCGTGAAAGTTCCATCTCTCGTCGCGCTT 433
Query 363 CAGATCCGTCGTCCTTCTGGAAAGTTCCACGGCGTTCTTAACATCGCGGCTATGGTGATG 422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 434 CAGATCCGTCGTCCTTCTGGAAAGTTTCACGGCGTTCTTAACATCGCGGCTATGGTGATG 493
Query 423 GATGCTTCTGAACTTCCGGCTGATTTCTTCAAGTCCGTTCAAGAGAGCCGTCGGAGTCG- 481
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||
Sbjct 494 GATGCTTCTGAACTTCCAGCTGATTTCTTCAAGTCGGTTCAAGAGATCCGTCGGAGTCGG 553
Query 482 AAGAATGAGAAAATCGAGATCTGCGGTTAGTTCGTCGGAGAACGGTTTCGCTGATGACGG 541
|| ||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 554 AA-AATGAGAAAGTCTAGATCTGCGGTTAGTTCGTCGGAGAACGGTTCCGCTGACGACGG 612
Query 542 CGAGAGTTCGAAAGAGAATTCGGTTTGTG-ATTCGGTTAATTACTCCGACGACGGTACGG 600
|||||||||||||||||||||||||| | || ||||||||| ||||||||||||||| |
Sbjct 613 TGAGAGTTCGAAAGAGAATTCGGTTTGCGGAT-CGGTTAATTTCTCCGACGACGGTACTG 671
Query 601 ACTCGACGGCGTCTTCTCCGATGCCGTCTCCTCTCAGAGACTGGAACGCTGTTCGAAATT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ACTCGACGGCGTCTTCTCCGATGCCGTCTCCTCTCAGAGACTGGAACGCTGTTCGAAATT 731
Query 661 TGGCGGGAAAGAATCACGTGAGATCGTCATCGGACGGCGGAGGATTGATGTGCTGTTTCT 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGGCGGGAAAGAATCACGTGCGATCGTCATCGGACGGCGGAGGATTGATGTGCTGTTTCT 791
Query 721 TGATGAAATCGTCGGGCATGTTACCACCCCTCAAGAAGAAAAATGACGGACGGCTGAGAT 780
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 792 TGATGAAATCGTCGGGCATGTTACCACC----AAGAAGAAAAATGACGGACGGCTGAGAT 847
Query 781 CTGTTATCTGATTGA-TTTCCAACGGTTTCAG 811
||||| ||| | || |||||||||||| |||
Sbjct 848 CTGTTGTCT--T-GAATTTCCAACGGTT-CAG 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5