BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943629
Length=636
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 998 0.0
> AT4G01150.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: thylakoid, chloroplast thylakoid membrane,
chloroplast, plastoglobule, chloroplast envelope; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59
species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi -
0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink). | chr4:493548-494850 FORWARD LENGTH=821
Length=821
Score = 998 bits (540), Expect = 0.0
Identities = 608/639 (95%), Gaps = 12/639 (2%)
Strand=Plus/Plus
Query 1 GAAGTTATCGGTGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTGTGGCCGTGA 60
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 125 GAAGTTCTCGGCGTGCTTCAATGGCGATATCAGTAGCAGCTTCGTCCTCTATGGCCGTGA 184
Query 61 TAGTTCCACGTGTCCCCGCCATCTCCACCCGTTGCTCCGCCGCCCCTTACCTTCCTCCGC 120
| ||||||||||| |||||| | ||||||||||||||||||| |||||| | |
Sbjct 185 TGGTTCCACGTGTTCCCGCCGTATCCACCCGTTGCTCCGCCGTCCCTTA------T---C 235
Query 121 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTAGTTTCAGGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 236 TTCCTCCTCGCTCCTTTGGCCGATCCTCTTTCACCGTTCCGTTGAAGCTTGTTTCAGGGA 295
Query 181 ATGGATTGCAAAAAGTTGAATTGATGAAGACAAGAGCTTCCTCAGAAGACACCTCGTCCA 240
||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||
Sbjct 296 ATGGATTGCAAAAAGTTGAATTGTTGAAGACAAGAGCTTCTTCAGAAGAGACCTCGTCCA 355
Query 241 TTGACACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTGATACCAACGAACTCATCACAGATTTGAAGGAAAAGTGGGATGGTCTTGAGAACAAAT 415
Query 301 CGACTGTACTCGTATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 360
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTACTGTACTTATATATGGAGGAGGAGCCATTGTTGCTGTTTGGTTATCTTCCATTGTTG 475
Query 361 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTAATGGAACTTGTCGGTCTCGGGT 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 476 TTGGTGCCATCAACTCTGTTCCTCTGCTTCCGAAAGTTATGGAACTTGTCGGTCTCGGGT 535
Query 421 ACACCGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAGGAATTGGCTG 595
Query 481 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGGATATTGAATCCTTGAAGAAGAAGATCGCAGGAAGCGAATAGATTCATTTTCAAATAA 655
Query 541 A-CCAGCTTTCTTTCTGTATGTTTTCCTGTAATATCGTGTTAT-T-ATACAATGTCTCTG 597
| |||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 656 AACCAGCTTTCTCTCTGTATGTTTTCCTGTAATATCGTGTTATATTATACAATGTCTCTG 715
Query 598 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 636
|||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTTCAACATTGTATCTGTTGCATCTGAAACTATTATCTT 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30693063817
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5