BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943647
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01026.1 | Symbols: PYL7, RCAR2 | PYR1-like 7 | chr4:447052-... 974 0.0
AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of AB... 488 3e-137
AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 300 1e-80
> AT4G01026.1 | Symbols: PYL7, RCAR2 | PYR1-like 7 | chr4:447052-448511
FORWARD LENGTH=1166
Length=1166
Score = 974 bits (527), Expect = 0.0
Identities = 615/656 (94%), Gaps = 11/656 (2%)
Strand=Plus/Plus
Query 12 TGGTCGGAAGATGGAGATGATCGGAGGAGACGAT--AG----AGTGATGAT-CGGAGCTC 64
||||||| |||||||||||||||||||||||||| || || |||| | ||||||||
Sbjct 120 TGGTCGG-AGATGGAGATGATCGGAGGAGACGATACAGATACAGAGATG-TACGGAGCTC 177
Query 65 TGGTGACGGCGCAGTCTTTAAGGTTGCATCATCGTCACCATTGCAGAGAGAACCAGTGTA 124
| |||||||| ||||| |||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 178 TAGTGACGGCACAGTCCTTAAGGTTGCGTCATCTTCACCACTGCAGAGAGAACCAGTGTA 237
Query 125 CCTCTGTTCTCGTCAAATACA-TCAAAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGG 183
||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||
Sbjct 238 CCTCTGTTCTCGTCAAATACATTC-AAGCTCCTGTTCATCTTGTTTGGTCACTGGTGCGG 296
Query 184 AGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATGCACTGTTAATGGTGAT 243
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 297 AGATTTGATCAGCCGCAGAAATACAAACCATTTATAAGCAGATGCACTGTAAATGGTGAT 356
Query 244 CCTGAGATTGGTTGTCTCAGAGAAGTTAATGTCAAATCTGGTCTTCCTGCGACTACCAGT 303
|||||||| ||||||||||||||||| |||||||||||||||||||| || || ||||||
Sbjct 357 CCTGAGATCGGTTGTCTCAGAGAAGTAAATGTCAAATCTGGTCTTCCAGCAACCACCAGT 416
Query 304 ACCGAGAGATTGGAACAGCTTGATGATGAAGAACACATTCTCGGTATCAACATCATTGGT 363
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 417 ACAGAGAGATTGGAACAGCTTGATGATGAAGAACACATCCTCGGTATCAACATCATTGGT 476
Query 364 GGTGATCACAGACTTAAGAATTACTCGTCGATCTTGACTGTACATCCAGAGATGATCGAT 423
|||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 477 GGTGATCATAGACTTAAGAATTACTCTTCGATCTTGACTGTGCATCCGGAGATGATTGAT 536
Query 424 GGGAGGTCAGGAACTATGGTGATTGAGTCTTTTGTTGTGGATGTTCCCCAAGGCAACACC 483
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 537 GGAAGGTCAGGAACTATGGTGATGGAGTCTTTTGTTGTGGATGTTCCTCAAGGCAACACC 596
Query 484 AAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGCT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGCT 656
Query 544 TGTGTCTCTGAAAGATTGGCTGCTCAGGACATTACCAATTCCATCGCCACTTTCTGTAAC 603
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 657 TGTGTCTCTGAAAGATTGGCTGCTCAAGACATTACCAATTCCATCGCAACTTTCTGTAAC 716
Query 604 ACTTCCAACGGATACAGAGAGAAGAATCATACAGCAACCAACCTTTGAAGATTTGG 659
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 717 GCTTCCAATGGATACAGAGAGAAGAATCATACAGAAACCAACCTTTGAAGATTTGG 772
> AT1G01360.1 | Symbols: RCAR1, PYL9 | regulatory component of
ABA receptor 1 | chr1:141971-143183 FORWARD LENGTH=1000
Length=1000
Score = 488 bits (264), Expect = 3e-137
Identities = 423/498 (85%), Gaps = 18/498 (4%)
Strand=Plus/Plus
Query 90 GCATCATCGTCACCAT-TGCAGAGAGAACCAGTGTACCTCTGTTCTCGTCAAATACATCA 148
|||||||| || | | |||||||| |||||||||||||||| ||| |||||| ||||||
Sbjct 236 GCATCATCAACATC-TGTGCAGAGAAAACCAGTGTACCTCTGCTCTTGTCAAACACATCA 294
Query 149 AAGCTCCTGTTCATCTCGTTTGGTCACTTGTGCGGAGATTTGATCAGCCGCAGAAATACA 208
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 295 AAGCTCCTCTTCATCTCGTTTGGTCACTTGTACGGAGATTTGATCAGCCGCAGAAATACA 354
Query 209 AACCATTTATAAGCAGATGCACTGTTAAT-GGTGATCCTGAGATTGGTTGTCTCAGAGAA 267
|||| ||| | |||||||| || | |||| ||||||||||| || || |||| ||||||
Sbjct 355 AACCGTTTGTGAGCAGATGTACAG-TAATCGGTGATCCTGAAATCGGCAGTCTTAGAGAA 413
Query 268 GTTAATGTCAAATCTGGTCTTCCTGCGACTACCA-GTACCGAGAGATTGGAACAGCTTGA 326
|| ||||| ||||||||||||||||| || | || ||| |||||||| |||| |||||
Sbjct 414 GTCAATGTTAAATCTGGTCTTCCTGCAAC-AACATCTACTGAGAGATTAGAACTTCTTGA 472
Query 327 TGATGAAGAACACATTCTCGGTATCAACATCATTGGTGGTGATCACAGACTTAAGAATTA 386
||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 473 TGATGAAGAACACATCCTCGGTATCAAAATCATCGGTGGTGATCACAGACTTAAGAATTA 532
Query 387 CTCGTCGATCTTGACTGTACATCCAGAGATGATCGATGGGA-G-GTCAGGAACTATGGTG 444
||||||||| ||||| || ||||| ||||| ||||| |||| | | ||||||| ||||||
Sbjct 533 CTCGTCGATTTTGACGGTTCATCCGGAGATAATCGA-GGGAAGAG-CAGGAACGATGGTG 590
Query 445 ATTGAGTCTTTTGTTGTGGATGTTCCCCAAGGCAACACCAAAG-ATGATACATGTTACTT 503
||||| || ||||| || |||||||| ||||| ||||| |||| |||| || || |||||
Sbjct 591 ATTGAATCGTTTGTAGTTGATGTTCCTCAAGGTAACAC-AAAGGATGAGACTTGCTACTT 649
Query 504 CGTGGAATCACTCATAA-AGTGTAACCTCAAATC-CTTGGCTTG-TGTCTCTGAAAGATT 560
|| ||| |||| || | | ||||| ||||| || || | | | ||| |||||||||||
Sbjct 650 TGTTGAAGCACTTATCAGA-TGTAATCTCAAGTCACTAG-CA-GATGTTTCTGAAAGATT 706
Query 561 GGCTGCTCAGGACATTAC 578
|||| |||||||||||||
Sbjct 707 GGCTTCTCAGGACATTAC 724
> AT4G01030.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr4:447941-450642 REVERSE LENGTH=2702
Length=2702
Score = 300 bits (162), Expect = 1e-80
Identities = 172/177 (97%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 483 CAAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2702 CAAAGATGATACATGTTACTTCGTGGAATCACTCATAAAGTGTAACCTCAAATCCTTGGC 2643
Query 543 TTGTGTCTCTGAAAGATTGGCTGCTCAGGACATTACCAATTCCATCGCCACTTTCTGTAA 602
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2642 TTGTGTCTCTGAAAGATTGGCTGCTCAAGACATTACCAATTCCATCGCAACTTTCTGTAA 2583
Query 603 CACTTCCAACGGATACAGAGAGAAGAATCATACAGCAACCAACCTTTGAAGATTTGG 659
| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2582 CGCTTCCAATGGATACAGAGAGAAGAATCATACAGAAACCAACCTTTGAAGATTTGG 2526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5