BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943653

Length=251
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00970.1 | Symbols: CRK41 | cysteine-rich RLK (RECEPTOR-like...   305    1e-82
  AT4G00960.1 | Symbols:  | Protein kinase superfamily protein | ...   196    6e-50


> AT4G00970.1 | Symbols: CRK41 | cysteine-rich RLK (RECEPTOR-like 
protein kinase) 41 | chr4:418437-421694 FORWARD LENGTH=1998
Length=1998

 Score =  305 bits (165),  Expect = 1e-82
 Identities = 197/212 (93%), Gaps = 4/212 (2%)
 Strand=Plus/Plus

Query  23    TGGTTTG-T-TGTGTCCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTTGT  80
             ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1788  TGGTTTGTTGTGTGTTCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTTGT  1847

Query  81    AATGCTCAATGCAAATGCTATCACTTTACCGAGACCCTCACAACCCGCTTTTTACACGGG  140
             |||||||||||||||| || ||||||||||||||||||| |||||||| |||||| ||||
Sbjct  1848  AATGCTCAATGCAAATTCTTTCACTTTACCGAGACCCTCGCAACCCGCATTTTACTCGGG  1907

Query  141   AGATGGAGAATCATT-TCCAAGATACAACAATCAGATAAATCATATTGCGTCTTTGAATG  199
             ||||||||||||||| || |||| |||| |||||||||||||||||||| ||||||||||
Sbjct  1908  AGATGGAGAATCATTGTC-AAGAGACAAAAATCAGATAAATCATATTGCATCTTTGAATG  1966

Query  200   ATGTTACAATTACTGAGTTCTATGCTCGTTAA  231
             ||||||||||||| |||||| |||||||||||
Sbjct  1967  ATGTTACAATTACCGAGTTCGATGCTCGTTAA  1998


> AT4G00960.1 | Symbols:  | Protein kinase superfamily protein 
| chr4:414361-416180 FORWARD LENGTH=1119
Length=1119

 Score =  196 bits (106),  Expect = 6e-50
 Identities = 182/217 (84%), Gaps = 12/217 (6%)
 Strand=Plus/Plus

Query  23    TGGTTTG-T-TGTGTCCAGGAGAATGCAGAGAGTAGACCAACAATGGCTTCTGTTGTT-G  79
             ||||||| | ||||| ||||||||| ||| |||||||||||||||||||||| ||||| |
Sbjct  903   TGGTTTGTTGTGTGTTCAGGAGAATCCAGGGAGTAGACCAACAATGGCTTCTATTGTTAG  962

Query  80    TAATGCTCAATGCAAATGCTATCACTTTACCGAGACCCTCACAACCCGCTTTTTACACGG  139
              |||||||||||||||| || ||||||||||||||||||  ||||||||||||||| | |
Sbjct  963   -AATGCTCAATGCAAATTCTTTCACTTTACCGAGACCCTTGCAACCCGCTTTTTACTCAG  1021

Query  140   GAGATGGAGAATCAT-TTCCAAGATACAACAATC--A-GATAAA---TCATATTGCGTCT  192
             ||| || ||| ||||  | ||||| |||||||||  |  | |||    | ||||||||||
Sbjct  1022  GAGTTGTAGACTCATCGT-CAAGAGACAACAATCATACAAGAAACCCGCGTATTGCGTCT  1080

Query  193   TTGAATGATGTTACAATTACTGAGTTCTATGCTCGTT  229
             |||||||||||||||||||| |||||  || ||||||
Sbjct  1081  TTGAATGATGTTACAATTACGGAGTTAGATCCTCGTT  1117



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11410779023


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5