BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943663

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00880.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   641    0.0  


> AT4G00880.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr4:366373-367274 REVERSE LENGTH=902
Length=902

 Score =  641 bits (347),  Expect = 0.0
 Identities = 372/384 (97%), Gaps = 2/384 (1%)
 Strand=Plus/Plus

Query  8    ATATTATTGTCCAATGGGTAACGGAGACAAAGTCATGAGCCACTGGAGCTTCCACATCCC  67
            ||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  202  ATATTATCGGCCCATGGGTAACGGAGACAAAGTCATGAGCCACTGGAGCTTCCACATCCC  261

Query  68   ACGTCTCCATCATCATGAACATGATCATGAAAAGGTACCAAAAGGGTGTTTGGCAGTGAA  127
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  262  ACGTCTCCATCATCATGAGCATGATCATGAAAAGGTACCAAAAGGGTGTTTGGCAGTGAA  321

Query  128  GGTAGGACAAGGAGAAGAGCAAGAGAGATTTGTGATTCCCGTTATGTACTTTAATCATCC  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  322  GGTAGGACAAGGAGAAGAGCAAGAGAGATTTGTGATTCCCGTTATGTACTTTAATCATCC  381

Query  188  TTTGTTTATG-CAACTCTTGAAGGAAGCTGAAGAAGAGTTTGGTTTTTCTCAAAAAGGGA  246
            |||||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  382  TTTGTTTG-GACAACTCTTGAAGGAAGCTGAAGAAGAGTTTGGTTTTGCTCAAAAAGGGA  440

Query  247  CAATCACGATCCCTTGTCACGTTGAGGAGTTTAGGTACGTTCGAGGATTGATTGATCGAG  306
            ||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||
Sbjct  441  CAATCACGATCCCTTGTCACGTTGAGGAGTTTAGGTATGTTCAAGGATTGATCGATCGAG  500

Query  307  AAAACACTAGATTTCTCGGTAATAATCTCCTTGATCATCACCATCATCATCACAACCATC  366
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  501  AAAACACTAGATTTCTCGGTACTAATCTCCTTGATCATCACCATCATCATCACAACCATC  560

Query  367  TCATCCGGTGTTTTAGGGTTTGAT  390
            ||||||||||||||||||||||||
Sbjct  561  TCATCCGGTGTTTTAGGGTTTGAT  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5