BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943664
Length=559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00872.1 | Symbols: | Plant invertase/pectin methylesterase... 654 0.0
AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase... 165 4e-40
> AT4G00872.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr4:364147-364736 REVERSE
LENGTH=495
Length=495
Score = 654 bits (354), Expect = 0.0
Identities = 469/520 (90%), Gaps = 26/520 (5%)
Strand=Plus/Plus
Query 21 ATGAAGAGGATGATCAAGTTTCTGCTATTAACACTTGTGGTGATCTCTCCCATATCGATA 80
||||| | |||||||||||||||||| |||| || ||||||||||||| || ||||||
Sbjct 1 ATGAAAACGATGATCAAGTTTCTGCTGTTAATAC---TGGTGATCTCTCCTATGTCGATA 57
Query 81 TGCGCCGAGAAGGACCTGATGATAAATGAATGCCACAATGCAGACGTCCCAGCCATATGC 140
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TGCGCCGAGAAGGACATGATGATAAATGAATGCCACAATGCAGACGTCCCAGCCATATGC 117
Query 141 ATGCAATGTCTTGAATCCGACCCAACCTCCATTCATGCCAACCATTTAGGCATAGCTGCC 200
||||||||||||||||||||||||| ||||||||| ||| ||||| |||||||||||| |
Sbjct 118 ATGCAATGTCTTGAATCCGACCCAAACTCCATTCACGCCGACCATATAGGCATAGCTGGC 177
Query 201 ATCGTCATAAACTGTCTCGAATCCCACCTCCATATCATCACCAACAACATAACAAATCTA 260
||||||||||||||||| |||||||||||||||||||| | || | | |
Sbjct 178 ATCGTCATAAACTGTCTTGAATCCCACCTCCATATCAT------C-AC----C--A---A 221
Query 261 TCGTCAAAGAAAGATAAAGGTGAAGTGAAAACAGCTCTGGAGGCTTGCAAAAAGGACTTG 320
| | || ||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 222 --G-C-AA-AAAGATAAAGGTGAAGTGAAAACAGCTCTGGAGATTTGCAAAAAAGACTTG 276
Query 321 TCGACGAATGCAGCTACAATACTGTCGGAAGCCAAAACAAGTCTGAAAACCGGTGATTAC 380
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 277 TCGACGAATGCATCTACAATACTGTCGGAAGCCAAAACAAGTTTGAAAACCGGTGATTAT 336
Query 381 GATAAAACCAACCGATCGATAAAGCTTGCGCTTGGCTTTCCCCTGGGATGT-CGATTCAA 439
|||||||||||| ||||||||||||||||||||||||||| ||| ||||| | |||||
Sbjct 337 GATAAAACCAACAAATCGATAAAGCTTGCGCTTGGCTTTCCTCTGAGATGTATG-TTCAA 395
Query 440 TCTCAAAAGTGTCAAGTTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCA 499
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TCTCAAACGTGTCAAGTTCACGTCTCCCCAACTATTTAGTCAAATCAATATCTATGCTCA 455
Query 500 ACTCTCTGACGCTGCTATGAGGATCATTGATCGCTTCTAA 539
||||||||||||||||||||||||||||||||||||||||
Sbjct 456 ACTCTCTGACGCTGCTATGAGGATCATTGATCGCTTCTAA 495
> AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE
LENGTH=699
Length=699
Score = 165 bits (89), Expect = 4e-40
Identities = 182/224 (81%), Gaps = 17/224 (8%)
Strand=Plus/Plus
Query 30 ATGATCAAGTTTCTGCTATTAACACTTG-TGGTGATCTCTCCCATATCGATATGCGCCGA 88
|||||||||||||| || ||| | | || | ||||||||| | |||| ||||||||
Sbjct 10 ATGATCAAGTTTCTCCTGTTAGCTC-TGCTCGTGATCTCT--C----CGATTTGCGCCGA 62
Query 89 GAAGGACCTGATGATAA-ATGAATGCCACAATGCAGACG-TCCCAGCCATATGCATGCAA 146
|||||||||||||| || | |||||||| |||||| | | ||| | |||| |||||||||
Sbjct 63 GAAGGACCTGATGA-AAGAGGAATGCCATAATGCACAAGTTCCGA-CCATTTGCATGCAA 120
Query 147 TGTCTTGAATCCGACCCAACCTCCATTCATGCCA-ACCAT-TTAGGCATAGCTGCCATCG 204
|||||||||||||||||||||||| ||||||| | ||| | || ||||| || | |||
Sbjct 121 TGTCTTGAATCCGACCCAACCTCCGTTCATGC-AGACCGTGTT-GGCATCGCCGAGATCA 178
Query 205 TCATAAACTGTCTCGAATCCCACCTCCATATCATCACCAA-CAA 247
||||| |||||||||| || | ||| ||||||||||||| |||
Sbjct 179 TCATACACTGTCTCGACTCTCGTCTCGATATCATCACCAAGCAA 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26825034498
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5