BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943665
Length=281
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein ... 213 7e-55
> AT1G22280.3 | Symbols: PAPP2C | phytochrome-associated protein
phosphatase type 2C | chr1:7873867-7875831 FORWARD LENGTH=1486
Length=1486
Score = 213 bits (115), Expect = 7e-55
Identities = 127/133 (95%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 99 AGATAAGGGACTTAAGACACACTTGAGTTCAGAACCTGACATAAAAGAAGCCACTGTAGA 158
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 908 AGATAAGGGACTTAAGACACACTTGAGTTCAGAGCCTGACATAAAAGAAGCTACTGTAGA 967
Query 159 TAGCCAGACAGATGTTCTTCTCGTGGCCAGTGATGGCATTTGGAAGGTAATGACAAATGA 218
|||||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||
Sbjct 968 TAGCCAGACAGATGTTCTTCTCTTGGCTAGTGATGGCATCTGGAAGGTGATGACAAATGA 1027
Query 219 AGAGGCAATGGAG 231
|||||||||||||
Sbjct 1028 AGAGGCAATGGAG 1040
Score = 67.6 bits (36), Expect = 6e-11
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 65 TTGAAGATAGAGGTGGATTTGTATCCAATCTACCAG 100
||||||||||||||||||||||||||||||||||||
Sbjct 823 TTGAAGATAGAGGTGGATTTGTATCCAATCTACCAG 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12918811493
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5