BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943669
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00840.1 | Symbols: | DHHC-type zinc finger family protein ... 1467 0.0
> AT4G00840.1 | Symbols: | DHHC-type zinc finger family protein
| chr4:355258-357279 REVERSE LENGTH=1275
Length=1275
Score = 1467 bits (794), Expect = 0.0
Identities = 867/903 (96%), Gaps = 2/903 (0%)
Strand=Plus/Plus
Query 1 TCCCTTTGACCAGGCTGGAGATGAACCTTTTCCGGTTCTGCTCCGGTCTGAAAGTCCTCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 TCCCTTTGACCAGGCTGGAGATGAACCTTTTCCGGTTCTGCTCCGGTCTGAAAGTCCTCG 214
Query 61 GCTATTTCATGATCCTTCTCGTCGTCGCCGTCGTTGGTGTATCTTACTACGCCGTCGTAG 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GCTATTTCATGATCCTTCTTGTCGTCGCCGTCGTTGGTGTATCTTACTACGCCGTCGTAG 274
Query 121 TTAGCACATGGTGGCCGATCTTGATCCG-GAGCGACCATGGAGCTTTATCTGCCCTCGCT 179
|||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||
Sbjct 275 TTAGCACATGGTGGCCGATCTTGATCCGCG-GAGACCATGGAGCTTTATCCGCCCTCGCT 333
Query 180 GCCTTAATCATCTTTGTTTTTCATTTCCTGCTGATAATGTTGTTGTGGAGCTACTTCACA 239
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 334 GCCTTAATCATCTTTGTTTTCCATTTCCTGCTGATAATGCTGTTGTGGAGCTACTTCACA 393
Query 240 ACTGTATTTACAGACCCTGGTTCTGTTCCCGAGTATTTCAGAAGAGAAATGGGAGGTGGT 299
|| || ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 394 ACAGTTTTTACAGACCCAGGTTCTGTTCCTGAGCATTTCAGAAGAGAAATGGGAGGTGGT 453
Query 300 GACAATTTGGAGGCTGGTACTTCGACAGAACAAGGAGCTTTTGGCTCTTTAGGTTACTGT 359
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 454 GACAGTTTGGAGGCTGGTACTTCGACAGATCAAGGAGCTTTTGGCTCTTTAGGTTACTGT 513
Query 360 ACCAAATGCCGGAATGTTAAGCCGCCTCGTTGCCATCATTGTTCTGTGTGTCAAAGATGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 ACCAAATGCCGGAATGTTAAGCCGCCTCGTTGCCATCATTGTTCTGTGTGTCAAAGATGT 573
Query 420 GTTCTCAAGATGGATCATCACTGTGTATGGATTGTAAACTGTGTTGGAGCACGCAATTAC 479
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 574 GTTCTTAAGATGGATCATCATTGTGTTTGGATTGTAAACTGTGTTGGAGCACGCAATTAC 633
Query 480 AAGTTTTTCCTTCTCTTTCTGTTGTATACTTTTCTTGAGACAATGTTGGACGTTATAGTC 539
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 634 AAGTTTTTCCTTCTCTTTCTGTTCTATACTTTTCTTGAGACAATGTTGGATGTTATTGTC 693
Query 540 CTGCTTCCTAGCTTCATTGAATTCTTCAGCCAAGCTATAAAGCATTCTTCTTCTCCGGGT 599
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTGCTTCCTAGTTTCATTGAATTCTTCAGCCAAGCTATAAAGCATTCTTCTTCTCCGGGT 753
Query 600 AAACTGGCCTCCCTCGTTCTGGCATTTGTTCTTAACTTAGCGTTCGTTCTCAGCCTTCTT 659
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 754 AAACTGGCCTCTCTCGTTCTGGCATTCGTTCTTAACTTTGCGTTCGTTCTCAGCCTTCTT 813
Query 660 TGTTTCGTAGTCATGCACCTTTCTCTTCTCTCATCCAACACTACTTCAGTCGAGATGCAT 719
||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct 814 TGTTTCGTAGTCATGCATATTTCTCTTCTCTCATCCAACACTACTTCAGTTGAGGTTCAT 873
Query 720 GAGAAAAATGGAGAAGTCAGATGGAAATATGACTTGGGAAAGAAGAAAAACTTCGAGGAG 779
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 874 GAGAAAAATGGAGAAGTCAGATGGAAATATGACTTAGGAAAGAAGAAAAACTTCGAGCAG 933
Query 780 GTTTTTGGGAAGAAGAAGGCGTTTTGGCTCCTCCCATTGTACTCTAAAGACGATCTCGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 GTTTTTGGGAAGAAGAAGGCGTTTTGGCTCCTCCCATTGTACTCTAAAGACGATATCGAT 993
Query 840 AACATGACTTCCCTTCAAGGCCTTGAATTTCCAACTCGTTCTGACATCGACCCTTGATTG 899
||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 994 AACATAACTTCCCTTGAAGGCCTTGAATTTCCAACTTGTTCTGACATCGACCCTTGATTG 1053
Query 900 AAA 902
|||
Sbjct 1054 AAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5