BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943671
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00820.1 | Symbols: iqd17 | IQ-domain 17 | chr4:349116-35155... 2457 0.0
> AT4G00820.1 | Symbols: iqd17 | IQ-domain 17 | chr4:349116-351550
FORWARD LENGTH=2032
Length=2032
Score = 2457 bits (1330), Expect = 0.0
Identities = 1546/1651 (94%), Gaps = 12/1651 (1%)
Strand=Plus/Plus
Query 1 TAAATTCGACCTAATCACCAATGGGTAAGAAGA-CTGGttcttcttcttcttcttGGCTC 59
||||| | |||||| | |||||||||||||||| | || |||||||||||||||||||
Sbjct 165 TAAATCCTACCTAACCTCCAATGGGTAAGAAGAGC-GG---TTCTTCTTCTTCTTGGCTC 220
Query 60 ACCGCCGTTAAACGAGCTTTCCGATCTCCCACCAAGAAAGAACATAACAACAATGCTCAC 119
|| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 221 ACTGCCGTGAAACGAGCTTTCCGATCTCCCACCAAGAAAGAACACAACAACAATGCTCAT 280
Query 120 GGTAATGCAGTCGACGAAGATGAAGACAAGAAGAAAGAGAAGAAACGGTGGTTATTTAGA 179
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 281 GGTAATGAAGTCGACGAAGATGAAGACAAGAAGAAAGAGAAGAGACGTTGGTTATTTAGA 340
Query 180 AAACCGACGAATCATGACTCTCCGGTGAAGACCTCCGGCGTCGGAAAAGAAGTTCCGGCA 239
||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 341 AAATCTACGAATCATGACTCTCCGGTGAAGACCTCCGGCGTCGGAAAAGACGCTCCGGCG 400
Query 240 CAGAAATCCACAGATACTACGACG---ATCAACCCAACCGCTTCATCCTCTGTTACAAAA 296
|||||||||||||| || |||||| ||||||||||||| || ||||||||||||| ||
Sbjct 401 CAGAAATCCACAGAAACAACGACGATCATCAACCCAACCGTTTTATCCTCTGTTACAGAA 460
Query 297 CAGAGATAC-ACCGCATCTACACCGCCCACCACCTTCTCCGCCGCATCGGAAACTCATCC 355
||||| ||| | ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 461 CAGAGGTACGA-CGCATCTACACCGCCGGCCACCGTCTCCGCCGCATCGGAAACTCATCC 519
Query 356 TCCTCCTCCGACGATGGAGTTACTAAATCTTACAAGACGGACTTATACCGCAAGAGAAGA 415
|||| | | |||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 520 TCCTTCGACAACGAAGGAGTTACCAAATCTTACAAGACGTACTTATACCGCAAGAGAAGA 579
Query 416 TTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATCTGGCAAGAAGGGCATTAAG 475
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 580 TTACGCAGCTGTTGTAATCCAAACTGGTTTCAGAGGCTATTTGGCAAGAAGAGCATTAAG 639
Query 476 AGCATTGAAAGGGCTTGTGAAGTTACAAGCACTTGTGAGAGGTCACAATGTGAGGAAGCA 535
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 640 AGCATTGAAAGGGCTAGTGAAGTTACAAGCACTAGTGAGAGGTCACAATGTGAGGAAGCA 699
Query 536 AGCAAAGATGACTTTAAGGTGTATGCAAGCTCTGGTTCGCGTCCAATCTCGTGTGCTTGA 595
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 700 AGCAAAGATGACTTTAAGGTGTATGCAAGCTCTAGTTCGAGTCCAATCTCGTGTGCTTGA 759
Query 596 CCAACGTAAACGTTTGTCTCACGACGGTAGTCGCAAATCTGCCTTCAGCGACACTCAAAG 655
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 760 CCAACGGAAACGCTTGTCTCACGATGGTAGTCGCAAATCTGCCTTCAGCGACACTCAAAG 819
Query 656 TGTACTTGAATCTCGTTATCTTCAAGACATTTCAGACCGAAGATCAATGTCAAGAGAAGG 715
||| || |||||||||||||||||||| || |||||| ||||||| ||||||||||||||
Sbjct 820 TGTGCTCGAATCTCGTTATCTTCAAGAAATATCAGACAGAAGATCCATGTCAAGAGAAGG 879
Query 716 AAGCAGCATTGCGGAAGATTGGGATGATCGACCACACACGATTGAGGAAGTGAAAGCAAT 775
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 AAGTAGCATTGCGGAAGATTGGGATGATCGACCACACACGATTGAGGAAGTGAAAGCAAT 939
Query 776 GTTGCAACAAAGACGAGACAATGCGTTGAGACGAGAGAGTAACAATAGTTTATCACAAGC 835
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 940 GTTGCAACAAAGACGAGACAATGCGTTGAGACGTGAGAGTAACAATAGTATATCACAAGC 999
Query 836 TTTTTCTCACCAGGTTCGGAGAACAAGAGGTAGTTATTCTACAGGAGACGAGGATGAAGA 895
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1000 TTTCTCTCACCAGGTTCGGAGAACAAGAGGTAGTTATTCTACAGGAGACGAGTATGAAGA 1059
Query 896 AGAGAGGCCGAAATGGTTAGACCGATGGATGGCTTCTAAACCATGGGATAAACGAGCTTC 955
|||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1060 AGAGAGACCGAAATGGTTAGACAGATGGATGGCTTCTAAACCGTGGGATAAACGAGCTTC 1119
Query 956 AACGGATCAAAGAGTACCACCAGTTTACAAAACCGTGGAAATCGATACTTCTCAACCGTA 1015
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1120 AACGGATCAAAGAGTACCACCGGTTTACAAAACCGTGGAGATCGATACTTCTCAACCGTA 1179
Query 1016 TTTAACCCGTGGTAACTCAAGAACAGGTGCCAGTCAAAGCCGTAATCAAAGGCCTAGTTC 1075
||||||||| |||||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct 1180 TTTAACCCGCGGTAACTCGAGAACCGGTGCAAGTCCAAGCCGTAGCCAAAGGCCTAGTTC 1239
Query 1076 ACCATCAAGAACCAGCCATCATTACCAACAACACAATTTCTCATCAGCTACACCGTCTCC 1135
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1240 ACCATCAAGGACCAGCCACCATTACCAACAACACAATTTCTCATCAGCTACACCATCTCC 1299
Query 1136 CGCTAAATCTAGACCGATACAAATCCGATCCGCCAGTCCACGGATCCAAAGAGATGACCG 1195
||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 1300 GGCTAAATCTAGACCGATACAAATTCGATCCGCTAGTCCGCGGATCCAAAGAGATGATCG 1359
Query 1196 GTCAGCATACAACTACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACTGC 1255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1360 GTCAGCGTACAACTACACATCAAACACACCTAGCTTGAGATCTAACTATAGTTTCACAGC 1419
Query 1256 AAGAAGTGGTTATAGCGTTTCTA-CAGCTACTACTACTGCTACAAATGCTGCGTTGCCAA 1314
||||||||||||||| |||| || || ||||||||||||||||||||||||| |||||||
Sbjct 1420 AAGAAGTGGTTATAGTGTTTGTACCA-CTACTACTACTGCTACAAATGCTGCATTGCCAA 1478
Query 1315 ACTACATGGCCATTACGGAATCCGCAAAGGCTAGAATCCGGTCTCAAAGTGCACCAAGGC 1374
|||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 1479 ACTACATGGCGATTACGGAATCTGCTAAGGCTAGAATCCGGTCTCAGAGTGCACCAAGGC 1538
Query 1375 AACGACCTTCGACACCCGAGAAAGAACGTATCGGGTCAGCTAGAAAACGGCTTTCGTTTC 1434
|||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1539 AACGGCCTTCAACACCCGAGAAAGAACGTATCAGTTCAGCTAGAAAACGGCTTTCGTTTC 1598
Query 1435 CGGTTCCACCGCTGCCTCAGCAAATAGACGGTCAGAGTTTAAGGAGTCCAAGCTTCAAAA 1494
| |||||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |
Sbjct 1599 CAGTTCCACCGCTGCCGCAGCAAATGGATGGTCAGAGTTTAAGGAGTCCAAGTTTCAAGA 1658
Query 1495 GTATAGGAGGCTCACAATTGGGTGCATTGGAGCAACAATCAAATTACTCTTCTTGTTGTA 1554
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1659 GTATAGGTGGCTCACAATTGGGTGCATTGGAACAACAATCAAATTACTCTTCTTGTTGTA 1718
Query 1555 CTGAGTCTCTTGGTGGTGGTGGAGAGATATCACCTGCTTCTACTAGCGATTATAGGCGAT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 CTGAGTCTCTTGGTGGTGGTGGAGAGATATCACCTGCTTCTACTAGCGATTATAGGCGAT 1778
Query 1615 GGTTAAGATGATTCCATAATCCAACCAAATC 1645
|||||||||||||||||||||||||||||||
Sbjct 1779 GGTTAAGATGATTCCATAATCCAACCAAATC 1809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5