BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943679
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00755.1 | Symbols: | F-box family protein | chr4:325065-32... 1567 0.0
> AT4G00755.1 | Symbols: | F-box family protein | chr4:325065-327008
FORWARD LENGTH=1584
Length=1584
Score = 1567 bits (848), Expect = 0.0
Identities = 1066/1167 (91%), Gaps = 31/1167 (3%)
Strand=Plus/Plus
Query 2 TTGAGTTTTATCGAAGAGGATGGATTTCGTCAACAATCTTGATACCGACACGTCGCTATC 61
||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 211 TTGAGTTTTATCGAACAAGATGGATTTCGTGAACAATCTTGATACCGACACGTCGCTATC 270
Query 62 GATTCTTTCTTGTCTAGATGATCCTTCAGATATTGTCCGTGCTAGTGCTGTCTCACGCTC 121
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 271 AATTCTCTCTTGTCTAGATGATCCATCAGATATTGTCCGTGCCAGTGCTGTCTCACGCTC 330
Query 122 CTGGCGACAATTTGCTGCTTTTGCATTTGCAGTGATTAAGTATAGTCTCTCCAGGAATCT 181
|||||||||| |||| | | | |||||||||||||||||| ||||||
Sbjct 331 CTGGCGACAA---------TTTG----T---G-G-TTAAGTATAGTCTCTCCAAGAATCT 372
Query 182 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAGTAGAAACAAGTAATGA 241
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 373 ATGCTTGAAGTTGTTCCATCAGCTATCTAATGTGGATCATATAATTGAAACAAGTAATGA 432
Query 242 TAGTAACCAAG-GTTCATCTGAAGCCGGGTCAAGCAGTCTCATCGATACAAGGCTACTTG 300
||| || || | ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 433 TAGAAATGGAGAG-TCATCTGAAGCTGGGTCAAGCAGTCTCATGGATACAAGGCTACTTG 491
Query 301 AAAAAGAGCACCGGGCTTATGCCTTATTGGCTAGAGGATGCATGTCGTCCCCTATCCAAA 360
|||||||||||||||||| |||||| ||||||||||| |||||||| || ||||| |||
Sbjct 492 AAAAAGAGCACCGGGCTTTTGCCTTGTTGGCTAGAGGGTGCATGTCTTCACCTATTGAAA 551
Query 361 GCTGTATAGCTGATGCCATTATAGCTTCCAGTACTGATAATTTCCCAGCAGAGAGCATCT 420
||||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct 552 GCTGTATAGCTGATGCCATTAGAGCTTCCAGTACTGATAATTACCCAGTAGAAAGCATCT 611
Query 421 TAAACACACTCGAAGAA-AGAGATCGGATTGGTCGAACCCCTTCATATTGGTCGAGTACA 479
|||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 TAAACACACTCG-AGAAGAGAGATCGGATTGGTCGAACCCCTTCTTATTGGTCGAGTACT 670
Query 480 GGGCAGCACAGAACTTCGGTGCCCGAGA-CACTTCTTTACAGGTTGAACGGTGATTTGTG 538
||||| |||| |||| |||||||||| | |||||||||||| ||||| |||||||||||
Sbjct 671 GGGCAACACAAAACTACGGTGCCCGA-ATCACTTCTTTACAAGTTGATTGGTGATTTGTG 729
Query 539 TGTCATTACTGAAATTAGCATTCAGCCTTTCCAAGCTTATTTTCAGCGTGGTCGTCCGAT 598
| ||||||||||| | ||||| || ||||||||||||||||||||||| |||| ||||||
Sbjct 730 TCTCATTACTGAAGTCAGCATCCATCCTTTCCAAGCTTATTTTCAGCGCGGTCATCCGAT 789
Query 599 ATACTCGTCACATTATGTTCGTTTCCGGTTGGGTCACCACAACGACAATTCACC-CAACT 657
|||||| |||||||||||||||||||||||||||||| | || ||||||||||| | |||
Sbjct 790 ATACTCTTCACATTATGTTCGTTTCCGGTTGGGTCACGAAAAGGACAATTCACCTC-ACT 848
Query 658 GCAACAATTCACAGGATAAAAAAGGTGAGCCGGGAAAGAGTTCAGTTGAAAGCAACTATG 717
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 849 ACAACAATTCACAGGATAAAAAAGGTGAGCCAGGAAAGAGTTCAATTGAAAGCAACTATG 908
Query 718 TATGGACTTACACTTCACAAGAGTTTCCGATGGCTCAGGAAAATCGATTGCAGAGCTTTA 777
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 TATGGACTTACACTTCACAAGAGTTTTCGATGGCTCAGGAAAATCGATTGCAGAGCTTTC 968
Query 778 AGCTGCCAGAACCTGTTCTTTGCATTGGTGGGTATATCCTAGTTGAGTTTCTAGGTAGAG 837
|||| |||||||||||||||||||||||||||||| | ||||| |||||||||||| |||
Sbjct 969 AGCTTCCAGAACCTGTTCTTTGCATTGGTGGGTATCTGCTAGTCGAGTTTCTAGGTCGAG 1028
Query 838 TTCAGACACAAGAAATGGATGGCCAGTACTATATATGCGTGTCACATGTCAAAGTGGAGG 897
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1029 TTCAGACACAAGAAATGGATGGCCAATACTATATATGCGTGTCACATGTCAAAGTGGAGG 1088
Query 898 GAAGATCTCTAGCAAAGTCATTTCGAGTTGAGAATGTGGATGACAATGGAAAATTTGGAT 957
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1089 GAAGATCTCTAGCAAAATCATTTCGAGTTGAGAATGTGGATGACAATGGAAAGTTTGGAT 1148
Query 958 TGAAGGTTTTGAGTTACAGTGATCCGAAAGAAAA-GGAGGAGATGGATGCAGAGGTGGGG 1016
||||||| |||||||||| |||||||||| |||| |||||||||||||||||||| |||
Sbjct 1149 TGAAGGTGTTGAGTTACAATGATCCGAAA-AAAATGGAGGAGATGGATGCAGAGGCCGGG 1207
Query 1017 CAGGAGATGGATGCAGACGCGGGGCAAACTCAGCTGAGAAATCTTGAACAGCTCTTGAAT 1076
||||| ||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 1208 CAGGACATGGATGCAGAGGCGGGCCAAAGTCAGCTGAGAAACCTTGAACAGCTCTTGAAT 1267
Query 1077 TTGTTGCACAGGCATCCTCTCGAGGTTGTCAACTATGTTTGGCCTGA-G--TCAGACGAC 1133
||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||
Sbjct 1268 TTGTTGCACAGGCATCCTCTCGATGTTGTCGACTATGTTTGGCCTGATGAGTCAGACGAC 1327
Query 1134 GAGTATGCTGAATCAGAAGATGAGGCT 1160
|||||||||||||||||||||||||||
Sbjct 1328 GAGTATGCTGAATCAGAAGATGAGGCT 1354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5