BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943692
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00620.1 | Symbols: | Amino acid dehydrogenase family prote... 750 0.0
AT4G00600.1 | Symbols: | Amino acid dehydrogenase family prote... 665 0.0
> AT4G00620.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:259028-261019 REVERSE LENGTH=1551
Length=1551
Score = 750 bits (406), Expect = 0.0
Identities = 757/921 (82%), Gaps = 45/921 (5%)
Strand=Plus/Plus
Query 17 CGCTATGGTATTTGAT-GAAATGGCTGTGGCAGTAAATATTATG-GATGAGATCAGAGTC 74
||| || ||| | ||| |||| |||||||||| ||| |||| | ||||| |||| | |
Sbjct 435 CGCAATTGTAATAGATGGAAA-GGCTGTGGCAAAAAAGATTA-GAGATGAAATCACAATT 492
Query 75 GAAACTTCAAGAATGGAGAAATCAATCAGTGCGGTTCCTGGTTTAGCAGTAATCCTTTTT 134
||| |||||||||| || ||||||| ||| | ||||||||||||||||||||||| ||
Sbjct 493 GAAGTTTCAAGAATGAAGGAATCAATTGGTGTGATTCCTGGTTTAGCAGTAATCCTTGTT 552
Query 135 GGGGACAG-TAAGA-GCTCCAAAGCCTA--TGACGTAC---CTG---G-TT-T-AGT-GG 180
|| ||||| |||| || | || | || ||| | || | | || | | | |
Sbjct 553 GGTGACAGAAAAGATTCTGC-AA-CTTATGTGAGGAACAAGAAGAAAGCTTGTGACTCCG 610
Query 181 TTGGAATCAAAACATTCCTAGTTCGTCTAGCTGAAGATTCATCAGAAGAGGAGGTGTTGA 240
||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 611 TTGGAATCAAATCGTTCGAAGTTCGTCTAGCTGAAGATTCATCAGAAGAAGAGGTGTTGA 670
Query 241 AATATGTCTCAA-ACTTCAACGATGATCCTTGTGTCCATGGAATCCTTGTTCAGTCGCCT 299
||| ||| ||| | ||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 671 AATCTGTATCAGGA-TTCAATGATGATCCTTCTGTCCATGGAATCCTTGTTCAGTTGCCT 729
Query 300 CTACCATCTCATATGGATGAGA-AGAACATATTGAATGCGGTTAGTGTTGAGAAAGACGT 358
|| ||||| ||||||||||| | |||||||| |||||||||||||| | |||||||| ||
Sbjct 730 CTGCCATCGCATATGGATGA-ACAGAACATACTGAATGCGGTTAGTATAGAGAAAGATGT 788
Query 359 TGATGGATTTCACCCACTCAATATTATATTGGACTACTTGCGATGCGCGGAAGAGAACCG 418
||| |||||||| || || || || || | |||| ||||| ||||| |||||||||||
Sbjct 789 TGACGGATTTCATCCGCT-AA-AT-AT-T-GGACGGCTTGCCATGCGTGGAAGAGAACCC 843
Query 419 TTATGCGTTCCGCGTATTCCAAAAGGATGCATCGAGCTGTTACACTGG-TACAACTTTGA 477
|||| |||||| ||| ||||||||||||||| ||| |||| || | | |||||| ||||
Sbjct 844 TTATTCGTTCCTTGTACTCCAAAAGGATGCATTGAGTTGTTGCA-TAGATACAACATTGA 902
Query 478 GATCAAAGAAAAGAGAGCAGTTGTTCTTGGAAGGAGTAACACTTTT-GGTATGCCAACTG 536
||||||| ||||||||| |||||| | ||||||||||||| || | ||||||||| |||
Sbjct 903 AATCAAAGGAAAGAGAGCGGTTGTTATCGGAAGGAGTAACA-TTGTCGGTATGCCAGCTG 961
Query 537 CTCTGTTACTGCAGAGA-AG-ATGCAACTGTTACCATTATCCATTCAAAAACCAAGAACC 594
|||| ||||||||||| || ||||||| |||| |||||||||||||| |||||||||||
Sbjct 962 CTCTTTTACTGCAGAGGGAGGATGCAACCGTTAGCATTATCCATTCAAGAACCAAGAACC 1021
Query 595 CTGAAGAAATTACAAGACAAGCTGATATCATAATCTCGGCTGTTGGACAACCAAACATGG 654
|||||||||| |||||| |||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1022 CTGAAGAAATCACAAGAGAAGCTGATATTATAATCTCAGCTGTTGGACAGCCAAACATGG 1081
Query 655 TCAGAAGAAGCTGGATAAAACCGGGTGCAGTCGTCATCAATGTTGGGACTAGTGTTGTTA 714
||||| ||||||||||||||||||| |||||| ||||| ||||||||| || | ||||
Sbjct 1082 TCAGAGGAAGCTGGATAAAACCGGGCGCAGTCCTCATCGATGTTGGGATTAATCCTGTTG 1141
Query 715 AGGATTCAAGCGCTCCATATGGCTTTCGAATGGTCGGAGACATTTGCTTTGAGGAGGTTT 774
||||| |||| ||| | ||| | |||| |||| ||||||||||||| ||||||| |
Sbjct 1142 AGGATCCAAGTGCTGCGCGTGGATATCGATTGGTTGGAGACATTTGCTACGAGGAGGCTA 1201
Query 775 GCAAAGTTGCATCAGCCATCACACCTGATGCGTGTGGCCCT-TCGTTATTAATGGCCAAA 833
||||||||||||||||||||||||||| | | || | | | | | | |||| ||| |
Sbjct 1202 GCAAAGTTGCATCAGCCATCACACCTGTTCC-TG-G-CGGTGTAGG-ACCAATGACCATA 1257
Query 834 GCCATGCTTCTATCCAACACTTTAACATCAGCCAAGAGAATTCACAACTTC-ATGTAAC- 891
|||||||||||||||||||||||||||||||| ||||| |||||||||||| | || ||
Sbjct 1258 GCCATGCTTCTATCCAACACTTTAACATCAGCTAAGAGGATTCACAACTTCCA-GTGACG 1316
Query 892 -C-CTTAAAAAGAATATTGCT 910
| ||||||||||| ||||||
Sbjct 1317 TCACTTAAAAAGAAGATTGCT 1337
> AT4G00600.1 | Symbols: | Amino acid dehydrogenase family protein
| chr4:255320-256610 REVERSE LENGTH=933
Length=933
Score = 665 bits (360), Expect = 0.0
Identities = 581/685 (85%), Gaps = 26/685 (4%)
Strand=Plus/Plus
Query 210 GCTGAAGATTCATCAGAAGAGGAGGTGTTGAAATATGTCTCA-AACTTCAACGATGATCC 268
|||||||||||||||||||| ||||||||||||||||| ||| | ||||| ||||||||
Sbjct 259 GCTGAAGATTCATCAGAAGAAGAGGTGTTGAAATATGTATCAGGA-TTCAATGATGATCC 317
Query 269 TTGTGTCCATGGAATCCTTGTTCAGTCGCCTCTACCATCTCATATGGATGAGA-AGAACA 327
|| ||| || ||| |||||||||||| |||||||||||| ||||||||||| | ||||||
Sbjct 318 TTCTGTTCACGGAGTCCTTGTTCAGTTGCCTCTACCATCGCATATGGATGA-ACAGAACA 376
Query 328 TATTGAATGCGGTTAGTGTTGAGAAAGACGTTGATGGATTTCACCCACTCAATATTATAT 387
||||||||||||||||| | ||||| |||||||||||||||||||| || | | ||||
Sbjct 377 TATTGAATGCGGTTAGTATAGAGAAGGACGTTGATGGATTTCACCCGCT--A-A--ATAT 431
Query 388 TGGACTACTTGCGATGCGCGGAAGAGAACCGTTATGCGTTCCGCGTATTCCAAAAGGATG 447
||||| ||||| ||||| || |||||||| |||| |||||| ||| ||||||||||||
Sbjct 432 TGGACGGCTTGCCATGCGTGGTAGAGAACCTTTATTCGTTCCATGTACTCCAAAAGGATG 491
Query 448 CATCGAGCTGTTACACTGGTACAACTTTGAGA-TCAAA-GAAAAGAGAGCAGTTGTTCTT 505
||||||| |||| ||| | |||||| |||| | ||||| | ||| |||||||||||| ||
Sbjct 492 CATCGAGTTGTTGCACAGATACAACATTGA-ATTCAAAGGCAAA-AGAGCAGTTGTTATT 549
Query 506 GGAAGGAGTAACACTT-TTGGTATGCCAACTGCTCTGTTACTGCAG-A-GAAGATGCAAC 562
||||||||||||| || ||||||||||| |||||||||| |||||| | || ||||||||
Sbjct 550 GGAAGGAGTAACA-TTGTTGGTATGCCAGCTGCTCTGTTGCTGCAGAAGGAGGATGCAAC 608
Query 563 TGTTACCATTATCCATTCAAAAACCAAGAACCCTGAAGAAATTACAAGACAAGCTGATAT 622
|||| |||||||||||||| ||||| ||||||||||||| | |||||||||||||||||
Sbjct 609 CGTTAGCATTATCCATTCAAGAACCATGAACCCTGAAGAACTCACAAGACAAGCTGATAT 668
Query 623 CATAATCTCGGCTGTT-GGACAACCAAACATGGTCAGAAGAAGCTGGATAAAACCGGGTG 681
| ||||||| |||||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 669 CCTAATCTCAGCTGTTGGGA-AACCAAACATGGTCAGAGGAAGCTGGATAAAACCGGGTG 727
Query 682 CAGTCGTCATCAATGTTGGGACTAGTGTTGTTAAGGATTCAAGCGCT-CCATATGGCTTT 740
||||| ||||| ||||||||| || |||| ||||| |||| ||| || |||
Sbjct 728 CAGTCCTCATCGATGTTGGGATTAAACCTGTTGAGGATCCAAGTGCTGCC-GGTGGAGAG 786
Query 741 CGAATGGTCGGAGACATTTGCTTTGAGGAGGTTTGCAAAGTTGCATCAGCCATCACACCT 800
|| |||| ||||||||||||| || ||||| | ||||| ||||||||||||||||||||
Sbjct 787 CGGTTGGTTGGAGACATTTGCTATGTGGAGGCTAGCAAAATTGCATCAGCCATCACACCT 846
Query 801 GATGCGTGTGGCCCT-TCGTTATTAATGGCCAAAGCCATGCTTCTATCCAACACTTTAAC 859
| | | ||| | | | | |||| ||| |||||||||||||||||||||||||||
Sbjct 847 G-TTC--CTGGTGATGTAG-GACCAATGACCATAGCCATGCTTCTATCCAACACTTTAAC 902
Query 860 ATCAGCCAAGAGAATTCACAACTTC 884
|||||||||||||||||||||||||
Sbjct 903 ATCAGCCAAGAGAATTCACAACTTC 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44457220095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5