BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943696
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00570.1 | Symbols: NAD-ME2 | NAD-dependent malic enzyme 2 |... 3009 0.0
> AT4G00570.1 | Symbols: NAD-ME2 | NAD-dependent malic enzyme 2
| chr4:242515-246771 REVERSE LENGTH=2253
Length=2253
Score = 3009 bits (1629), Expect = 0.0
Identities = 1775/1847 (96%), Gaps = 3/1847 (0%)
Strand=Plus/Plus
Query 2 TGAGTGAT-TTTCGAGACCGATGATGTGGAAGAACATTGCTGGGTTCTCTAAGGCTGCCG 60
|||||||| ||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct 108 TGAGTGATATTTCGAGACCGATGATGTGGAAGAACATTGCTGGGTTGTCGAAGGCAGCGG 167
Query 61 CTGCGGCAAGAACCCACGGATCTCGGCGGTGCTTTTCCACAGCGATTCCTGGTCCTTGTA 120
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 168 CAGCGGCAAGAACACACGGATCTCGGCGGTGCTTTTCCACAGCGATTCCTGGTCCTTGCA 227
Query 121 TCGTCCACAAGCGTGGTGCTGATATTCTTCACGATCCATGGTTCAATAAGGACACAGGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TCGTCCACAAGCGTGGTGCTGATATTCTTCACGATCCATGGTTCAATAAGGACACAGGTT 287
Query 181 TTCCTTTGACTGAGAGAGATAGATTGGGGATACGAGGCTTGCTTCCTCCTCGTGTTATGA 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 288 TTCCTTTGACTGAGAGAGATAGATTAGGGATACGAGGCTTGCTTCCTCCTCGTGTTATGA 347
Query 241 CCTGTGAACAGCAATATGATCGTTTTATTGAGTCTTTTCGTTCGCTAGAGAGGAATACAG 300
|||||| |||||||| ||||||||| |||||||| |||||||||||||||| || |||
Sbjct 348 CCTGTGTACAGCAATGTGATCGTTTCATTGAGTCGTTTCGTTCGCTAGAGAACAACACAA 407
Query 301 CAGGACAGCCTGAAAACGTTG-TGTCATTAGCTAAATGGAGGATCTTGAATAGATTGCAT 359
|||| ||||||||||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 408 AAGGAGAGCCTGAAAACGTTGTTG-CATTAGCTAAATGGAGGATGTTGAATAGATTGCAT 466
Query 360 GACCGTAATGAGACTTTGTACTACCGAGTCCTTATTGATAACATCAAAGATTTTGCCCCC 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 467 GACCGTAATGAGACTTTGTACTACCGAGTTCTTATTGATAACATCAAAGATTTTGCCCCC 526
Query 420 ATTATATACACTCCCACGGTTGGACTGGTTTGTCAGAACTATTCGGGTTTGTATAGAAGA 479
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 527 ATTATATACACTCCTACGGTTGGACTTGTTTGTCAGAACTATTCTGGTTTGTATAGAAGA 586
Query 480 CCGCGAGGAATGTACTTCAGTGCCAAAGACAAAGGAGAGATGATGTCTATGATATATAAC 539
|| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 587 CCAAGAGGAATGTACTTCAGCGCCAAAGACAAAGGAGAGATGATGTCTATGATTTATAAC 646
Query 540 TGGCCAGCTCAGCAGGTTGATATGATTGTCATCACTGATGGTAGCCGTATTTTGGGCTTA 599
||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TGGCCTGCTCCGCAGGTAGATATGATTGTCATCACTGATGGTAGCCGTATTTTGGGCTTA 706
Query 600 GGAGACCTTGGAGTCCAGGGAATTGGGATTCCTATCGGAAAGCTCGACATGTATGTGGCT 659
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 707 GGAGACCTTGGAGTACAGGGAATTGGGATTCCTATTGGAAAGCTCGACATGTATGTCGCT 766
Query 660 GCAGCAGGAATCAATCCACAGAGAGTTTTGCCAATTATGTTGGATGTGGGCACAAATAAT 719
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 767 GCTGCAGGAATCAATCCACAGAGAGTTTTGCCAATTATGTTGGATGTAGGCACAAATAAT 826
Query 720 GAAAAGCTCCTACAGAATGATCTCTATTTAGGAGTCAGACAGCCTAGGTTGGAAGGAGAG 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 827 GAAAAGCTCCTACAGAATGATCTCTATTTAGGAGTCAGACAACCTAGGTTGGAAGGAGAG 886
Query 780 GAGTACCTTGAGATTATTGATGAATTTATGGAAGCTGCATTTACACGTTGGCCAAAGGCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GAGTACCTTGAGATTATTGATGAATTTATGGAAGCTGCATTTACACGTTGGCCAAAGGCC 946
Query 840 GTCGTACAGTTCGAAGATTTCCAAGCGAAATGGGCTTTCGAAACATTGGATAGATATCGG 899
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 947 GTCGTACAGTTCGAAGATTTCCAAGCGAAATGGGCTTTCGGAACATTGGAAAGATATCGG 1006
Query 900 AAGAAATTTTGCATGTTCAATGATGATGTCCAGGGAACTGCTGGTGTTGCACTGGCTGGA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AAGAAATTTTGCATGTTCAATGATGATGTCCAGGGAACTGCTGGTGTTGCACTGGCTGGA 1066
Query 960 CTATTGGGAACTGTAAGAGCCCAAGGTCGTCCTTTATCCGACTTTGTGAACCAAAAGATT 1019
|||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1067 CTATTGGGAACTGTAAGAGCTCAAGGTCGGCCGATATCCGACTTTGTGAACCAAAAGATT 1126
Query 1020 GTTGTGGTGGGAGCTGGAAGTGCAGGGCTTGGTGTAACTAAGATGGCAGTACAGGCAGTT 1079
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1127 GTTGTGGTGGGAGCTGGAAGTGCTGGGCTTGGTGTAACTAAGATGGCAGTACAGGCAGTT 1186
Query 1080 GCAAGAATGGCAGGTATCAGCGAGATTGAAGCAACAAAAAACTTTTACCTAATAGATAAA 1139
|| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1187 GCCAGAATGGCAGGTATCAGCGAGAGTGAAGCAACAAAAAACTTTTACCTGATAGATAAA 1246
Query 1140 GATGGTCTTGTCACCACGGAAAGGACAAAACTTGACCCAGGAGCTGTACTTTTTGCCAAA 1199
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GATGGTCTTGTCACCACGGAGAGGACAAAACTTGACCCAGGAGCTGTACTTTTTGCCAAA 1306
Query 1200 AATCCAGCTGAGATACGTGAGGGAGCAAGTATCGTTGAAGTGGTGAAGAAAGTGAGGCCA 1259
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 AATCCAGCTGAGATACGCGAGGGAGCAAGTATCGTTGAAGTGGTGAAGAAAGTGAGGCCA 1366
Query 1260 CATGTTCTTCTTGGTTTATCTGGAGTTGGTGGTATCTTCAATGAAGAAGTTCTCAAGGCG 1319
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1367 CATGTTCTTCTTGGTTTATCTGGAGTTGGTGGTATCTTTAATGAAGAAGTTCTCAAGGCG 1426
Query 1320 ATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCTATGTCGAATCCCACCTTGAAT 1379
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1427 ATGCGAGAATCTGACTCATGCAAGCCTGCCATTTTTGCCATGTCGAATCCCACTTTGAAT 1486
Query 1380 GCCGAGTGCACTGCTGTTGATGCTTTCAAGCACGCCGGAGGAAACATAGTCTTTGCAAGT 1439
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1487 GCCGAGTGCACTGCTGCTGATGCTTTCAAACACGCCGGAGGAAACATTGTCTTTGCAAGT 1546
Query 1440 GGAAGCCCATTTGAGAACGTTGAACTTGATAATGGTAAAGTAGGACATGTGAATCAGGCT 1499
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1547 GGAAGTCCATTTGAGAACGTTGAACTTGAGAATGGTAAAGTAGGACATGTGAATCAGGCT 1606
Query 1500 AACAACATGTACCTATTCCCGGGGATCGGGCTAGGGACTCTTCTCTCTGGTGCACGTATC 1559
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1607 AACAACATGTATTTATTCCCGGGGATCGGGCTAGGGACTCTTCTCTCTGGTGCACGTATC 1666
Query 1560 GTAACTGATGGAATGCTGCAAGCAGCTTCTGAATGCCTTGCTTCGTACATGACCGACGAA 1619
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct 1667 GTAACTGATGGAATGCTACAAGCAGCTTCTGAATGCCTTGCGTCCTACATGACCGATGAA 1726
Query 1620 GAAGTCCAAAAAGGCATACTTTACCCTTCAATCAACAACATCCGACACATAACAGCTGAA 1679
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1727 GAAGTCCAAAAAGGCATCCTTTACCCTTCAATCAACAACATCCGACACATAACAGCTGAA 1786
Query 1680 GTCGGGGCAGCTGTTCTACGAGCTGCGGTTACTGATGACATTGCAGAAGGACATGGTGAT 1739
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1787 GTCGGGGCAGCTGTTCTACGAGCTGCGGTGACTGATGACATTGCAGAAGGACATGGTGAT 1846
Query 1740 GTTGGTCCCAAAGATCTCGGCCACATGTCTAAGGAGGACACAGTGAATTACATCACACGC 1799
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1847 GTTGGTCCCAAAGATCTCAGCCACATGTCTAAGGAGGATACAGTGAATTACATTACACGC 1906
Query 1800 AACATGTGGTTCCCAATTTACAGCCCTCTCGTTCACGAGAAATAGAC 1846
|||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1907 AACATGTGGTTCCCTGTTTACAGCCCTCTCGTTCACGAGAAATAGAC 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5