BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943707
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00500.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2246 0.0
> AT4G00500.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:225028-227396 REVERSE LENGTH=1809
Length=1809
Score = 2246 bits (1216), Expect = 0.0
Identities = 1359/1429 (95%), Gaps = 5/1429 (0%)
Strand=Plus/Plus
Query 1 ATGCTTGCTTGCTTCATAGGTTCTCATGTCGATACTGTGTTGCGTTCCCGTACTTGAATG 60
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 216 ATGCTTGCTTGCTTCATAGGTTCTCATGTCGATACTGTGTTGTGTTCCTGTACTTGAATG 275
Query 61 TGTCTATTGCTTGGGTTGTGCCCATTGGCTGTGGAAGAAATGTTTATACTCAGCAGGTCA 120
||| || |||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 276 TGTGTACTGCTTGGGTTGTACCCATTGGTTGTGGAAGAAATGTTTATACTCAGCAGGTCA 335
Query 121 CGAGAGTGAGAATTGGGGATTAGCTACATCAGATGAGTTTGAGCCAATCCCTAGGATCTG 180
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 336 CGAGAGTGAGAATTGGGGATTAGCTACATCTGATGAGTTTGAGCCTATCCCTAGGATCTG 395
Query 181 CCGCTTGATCTTAGCCGTCTATGAGGAGAATCTCCATGACCCTATGTGGGCACCTCCTGG 240
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 396 CCGCTTGATCTTAGCCGTCTATGAGGAGAATCTTCATGACCCTATGTGGGCACCTCCTGA 455
Query 241 TGGTTATGGGCTTGACCCAAATCATGTTATTCTCAAGAAAGACTATGACCAGACTGAGGG 300
|||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 456 TGGTTATGGGATTGATCCAAATCATGTTATTCTGAAGAAAGACTATGACCAGACTGAGGG 515
Query 301 TCGTGTGACGCCTTACATGATCTACTTGGATCATGACAATTGTGATCTAGTTTTGGCTAT 360
|||||||||||||||||||||||||||||||||||| ||| ||||| | || ||||||||
Sbjct 516 TCGTGTGACGCCTTACATGATCTACTTGGATCATGAGAATGGTGATGTGGTCTTGGCTAT 575
Query 361 TAGAGGGCTGAATTTGGCTAAGGAGTGTGATTATGCTGTTCTTCTTGATAACAAACTTGG 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 TAGAGGGCTGAATTTAGCTAAGGAGTGTGATTATGCTGTTCTTCTTGATAACAAACTTGG 635
Query 421 CCAGACTAAGTTTGATGGAGGTTATGTACATAACGGGTTGTTAAAAGCGGCCATGTGGGT 480
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 636 GCAGACTAAGTTTGATGGAGGTTATGTACATAACGGGTTGTTAAAGGCGGCCATGTGGGT 695
Query 481 TTTTGAGGAGGAGCATGTGGTTCTAAGGGAATTACTCGAGGCAAACCCGGGCTATTCCTT 540
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 696 TTTTGAAGAGGAGCATGTGGTTCTAAGGGAATTACTCGAGGCAAACCCGAGCTATTCCTT 755
Query 541 GACGTTTGTTGGCCATTCGTTGGGTGCAGGGGTTGTGTCTTTGCTTGTCTTATTCGTGAT 600
|||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 756 GACGTTTGTTGGACATTCGTTAGGAGCAGGGGTTGTTTCTTTGCTTGTCTTATTCGTGAT 815
Query 601 TCAGAACCGGGATAGGTTGGGGAACATAGAGAGAAAGAGGATAAGATGCTTTGCTATTGC 660
||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 816 TCAGAACCGGGTTAGGTTGGGGAACATTGAGAGAAAGAGGATTAGATGCTTTGCTATTGC 875
Query 661 TCCTCCAAGATGTATGTCTCTCCATCTAGCAGTGACTTATGCAGATGTCATAAACTCTGT 720
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 876 TCCTCCAAGATGTATGTCTCTCCATCTAGCAGTGACATATGCAGATGTCATCAACTCTGT 935
Query 721 TGTTCTTCAGGATGATTTCTTGCCTCGGACTACCACAGCTCTGGAGAATGTCTTCAAGTC 780
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 936 TGTTCTACAGGATGATTTCTTACCTCGGACTACCACAGCTCTGGAGAATGTCTTCAAGTC 995
Query 781 AATTATCTGCTTGCCATGCTTGTTGTGTCTCACTTGTTTAAAAGATACATTCACATTTGA 840
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 996 AATTATCTGCTTGCCATGCTTGTTGTGTCTCACATGTTTGAAAGATACATTCACATTCGA 1055
Query 841 GGAGAAAAAGCTCAAAGATGCAAGGCGTCTATATGCTCCTGGTAGGTTATACCACATCGT 900
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1056 GGAGAGGAAGCTCAAAGATGCAAGGCGTCTATATGCTCCTGGTAGGTTATACCATATCGT 1115
Query 901 TGTGCGCAAGCCCTTGAGATTAGGAAGATATCCACCTGTTGTGAGAACAGCTGTCCCAGT 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 CGTGCGCAAGCCCTTGAGATTAGGAAGATATCCACCTGTTGTGAGAACAGCTGTCCCAGT 1175
Query 961 TGATGGGAGATTTGAGCAGATTGTTCTCTCGTGTAATGCAACAGCAGATCACGCCATCAT 1020
|||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1176 TGATGGGAGATTTGAGCAGATTGTTCTCTCCTGTAATGCAACAGCGGATCATGCCATCAT 1235
Query 1021 CTGGATTGAAAGGGAATCGCAGACAGCTCTTGAGTTAATGTTGGAAGAGGACCAAGTTAT 1080
|||||||||||||||||| |||| |||||| || |||||| |||||||||||||||||||
Sbjct 1236 CTGGATTGAAAGGGAATCACAGAGAGCTCTCGATTTAATGGTGGAAGAGGACCAAGTTAT 1295
Query 1081 GCAGATTCCGGTGGAGCAGAAAATCGTGCGCCAGAAATCAATTGTTGAGGATCATGACGA 1140
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1296 GCAGATTCCGGTGGAGCAGAAAATTGTACGCCAGAAATCAATTGTTGAGGATCATGACGA 1355
Query 1141 AGAATACAAAGCGGCTATAATGAAGGCAGCTTCTCTGAACATCCCCATGTCTCCATCACC 1200
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1356 AGAATACAGAGCGGCTATAATGAAAGCAGCTTCTCTGAACATCCCCATGTCTCCATCGCC 1415
Query 1201 GTCTTATGGAACATTCCATGATACAGAAGAAGGAGAAAGCTCTGCAGGATCAGGCATGGA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GTCTTATGGAACATTCCATGATACAGAAGAAGGAGAAAGCTCTGCAGGATCAGGCATGGA 1475
Query 1261 AGGATCCCCGTCCCGGTGGTCCTTCAAAGGAATGAGaaaaaaaTGGGATCAATTCATAGA 1320
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1476 AGGATCCCCTTCCGGGTGGTCCTTCAAAGGAATGAGAAGAAAATGGGATCAATTCATAGA 1535
Query 1321 TTGCCATTTTCCTGTAAATGACCACAGAGAACATATAATCTTCAAGAAAA-ATGAATCAT 1379
|||||||||||||||||||||| |||| |||||||| |||||||| ||| | ||||| |
Sbjct 1536 TTGCCATTTTCCTGTAAATGACAACAGTGAACATATGATCTTCAA-AAATCAGGAATC-T 1593
Query 1380 CA-GCTTTGTTGTGTGGTCAAGAAACATTATAAATCGTGGTATAGGTGT 1427
|| ||||||||||||||||||||||||| | ||||| || |||||||||
Sbjct 1594 CAAGCTTTGTTGTGTGGTCAAGAAACATGA-AAATCTTGTTATAGGTGT 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70531765725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5