BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943718

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G26690.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family pr...   219    1e-56


> AT1G26690.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family 
protein | chr1:9224145-9225775 REVERSE LENGTH=892
Length=892

 Score =  219 bits (118),  Expect = 1e-56
 Identities = 134/142 (94%), Gaps = 0/142 (0%)
 Strand=Plus/Plus

Query  1    CGGTGGAGGCTGGAGATTATATGGCTTGTTTCACTGCTCTTGATCATAAACCTGAGGTTG  60
            |||||||| |||||||||| |||||||||| ||| ||| |||||||||||||||||||| 
Sbjct  377  CGGTGGAGTCTGGAGATTACATGGCTTGTTACACAGCTGTTGATCATAAACCTGAGGTTA  436

Query  61   CATTGAGTATTGATTTCGATAGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTAG  120
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct  437  CATTGAGTATTGATTTCGATTGGAGAACTGGTGTTCAATCTAAAAGCTGGAGTAGTGTTG  496

Query  121  CTAAGAAGAGCCAAGTCGAAGT  142
            ||||||||||||||||||||||
Sbjct  497  CTAAGAAGAGCCAAGTCGAAGT  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5