BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943721
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00360.1 | Symbols: CYP86A2, ATT1 | cytochrome P450, family ... 2713 0.0
> AT4G00360.1 | Symbols: CYP86A2, ATT1 | cytochrome P450, family
86, subfamily A, polypeptide 2 | chr4:160768-163023 FORWARD
LENGTH=2090
Length=2090
Score = 2713 bits (1469), Expect = 0.0
Identities = 1631/1709 (95%), Gaps = 12/1709 (1%)
Strand=Plus/Plus
Query 1 TATAATTTC--ATTCAATTGATATGGATGTATCCAACACGATGCTGCTTGTAGCTGTTGT 58
||| ||||| |||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 163 TATCATTTCATATTC-ATTGATATGGATGTCTCCAACACGATGCTCCTTGTAGCTGTTGT 221
Query 59 TGCAGCTTACTGGCTATGGTTCCAGCGGATCTCACGATGGCTAAAGGGTCCACGTGTCTG 118
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 222 TGCAGCTTACTGGCTATGGTTCCAGCGGATCTCAAGGTGGCTAAAGGGTCCACGTGTTTG 281
Query 119 GCCAGTGTTGGGCAGTCTTCCTGGTCTGATCGAGCAGCGTGACCGTATGCACGAGTGGAT 178
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 282 GCCAGTTTTGGGCAGTCTTCCGGGTCTGATCGAGCAGCGTGACCGTATGCACGACTGGAT 341
Query 179 CACTGAGAACCTCCGTGCGTGTGGCGGCACTTACCAGACATGTATCTGCGCCGTGCCTTT 238
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 342 CACTGAGAACCTCCGTGCGTGTGGCGGCACTTATCAGACATGTATCTGCGCCGTACCTTT 401
Query 239 CTTGGCAAAGAAGCAAGGTCTCGTGACCGTCACGTGTGACCCCAAGAACATCGAGCACAT 298
||||||||| |||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 402 CTTGGCAAAAAAGCAAGGTCTCGTGACCGTCACGTGCGATCCCAAGAACATCGAACACAT 461
Query 299 GCTCAAGACCAGGTTCGACAACTACCCTAAAGGTCCTACGTGGCAAGCCGTGTTCCATGA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GCTCAAGACCAGGTTCGACAACTACCCTAAAGGTCCTACGTGGCAAGCCGTGTTCCATGA 521
Query 359 CTTCCTCGGCCAGGGCATCTTCAACTCCGACGGTGACACTTGGCTCTTCCAGCGTAAAAC 418
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CTTCCTCGGCCAAGGTATCTTCAACTCCGACGGTGACACTTGGCTCTTCCAGCGTAAAAC 581
Query 419 CGCCGCTCTTGAATTCACCACTAGGACGTTGAGGCAAGCGATGGGTCGGTGGGTGAACCG 478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 582 CGCCGCTCTTGAATTCACCACCAGGACGTTGAGGCAAGCGATGGGTCGGTGGGTGAACCG 641
Query 479 GGGAATTAAGCTCC-GTTTCTGTCCGATTCTTGAGACGGCTCAGAACAATTACGAGCCGG 537
|||||| ||||||| |||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 642 GGGAATCAAGCTCCGGTTT-TGTCCAATTCTCGAAACGGCTCAGAACAATTACGAGCCGG 700
Query 538 TTGATCTCCAAGACTTAATACTTCGGCTCACATTCGACAACGTTTGCGGTTTAGCATTCG 597
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 701 TTGATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGTTTAGCATTCG 760
Query 598 GTAAGGACACTCGAACCTGCGCACCGGGACTTCCCGAGAACGGTTTCGCCACGGCTTTCG 657
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 761 GTAAAGACACTCGAACCTGCGCACCGGGACTTCCCGAGAACGGTTTCGCCTCGGCTTTCG 820
Query 658 ACCGAGCCACCGAAGCCTCTCTACAGCGGTTTATTCTACCGGAGTTTCTATGGAGGCTGA 717
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 821 ACCGAGCCACCGAAGCTTCTCTCCAGCGGTTTATTCTACCAGAGTTTCTATGGAGGCTGA 880
Query 718 AGAAATGGCTTGGGCTCGGCTTAGAAGTCAGCTTGAGCCGGAGCTTAGGAGAGATCGATG 777
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 881 AGAAATGGCTTGGACTCGGCTTAGAAGTCAGCTTGAGCCGGAGCCTAGGAGAGATCGATG 940
Query 778 GGTATTTAGATGCTGTCATTAATACACGTAAGCAAGAATTGCTGAGTCAGCAAGAAAGCG 837
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 941 GGTATTTAGATGCTGTCATTAATACACGTAAGCAAGAATTGCTGAGTCAGCGAGAGAGTG 1000
Query 838 GGGTCCAGCGACACGACGATCTCCTCTCTCGTTTCATGAAGAAGAAAGATCAGTCCTACA 897
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1001 GGGTCCAGCGTCACGACGATCTCCTCTCTCGTTTCATGAAGAAGAAAGACCAGTCGTACA 1060
Query 898 GCGAGACGTTCTTACGACACGTGGCTCTTAATTTTATCCTTGCTGGACGTGACACGTCAT 957
||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 1061 GCGAGACGTTCTTACGACACGTGGCGCTTAACTTCATCCTAGCTGGACGTGACACGTCAT 1120
Query 958 CAGTAGCGTTGAGCTGGTTTTTCTGGCTCATCACGACGCATCCGACGGTCGAGGATAAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1121 CAGTAGCGTTGAGCTGGTTTTTCTGGCTCATCACGACGCATCCGACGGTTGAGGATAAGA 1180
Query 1018 TCGTCCGCGAGATATGCTCCGTTCTGATTGAGACACGTGGAACCGATGTATCGTCGTGGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TCGTCCGCGAGATATGCTCCGTTCTGATTGAGACACGTGGAACCGATGTATCGTCGTGGA 1240
Query 1078 CGGCGGAGCCGTTGGAATTCGATGAGGTGGACCGGTTGGTTTACCTGAAGGCGGCGCTCT 1137
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1241 CGGCGGAGCCGTTGGAATTCGATGAGGTCGACCGGTTGGTTTACCTGAAGGCCGCGCTCT 1300
Query 1138 CCGAGACGTTGAGGCTTTACCCGTCGGTGCCGGAAGATTCGAAGCACGTCGTGAACGATG 1197
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1301 CTGAGACGTTGAGGCTTTACCCGTCGGTGCCGGAAGATTCAAAGCACGTCGTGAACGACG 1360
Query 1198 ATATCTTGCCGGACGGAACTTTTGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACG 1257
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1361 ATATCTTACCGGACGGAACTTTCGTACCGGCGGGATCGTCGGTGACTTATTCGATCTACG 1420
Query 1258 CGGCGGGGAGGATGAAGAGCACGTGGGGCGAGGATTGTCT-GGAATTTAAGCCGGAGAGG 1316
|||||||||||||||||||||||||||| |||||||| || |||||| || |||||||||
Sbjct 1421 CGGCGGGGAGGATGAAGAGCACGTGGGGAGAGGATTG-CTTGGAATTCAAACCGGAGAGG 1479
Query 1317 TGGATTTCGCCGGACGATGGGAAATTCGTGAATCACGATCAGTATCGATTCGTGGCGTTT 1376
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1480 TGGATCTCGCCGGACGATGGAAAATTCGTGAATCACGATCAGTACCGATTCGTGGCGTTT 1539
Query 1377 AACGCCGGACCAAGGATCTGTCTAGGAAAAGATCTAGCGTATCTGCAGATGAAGACGATC 1436
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 AACGCCGGACCTAGGATCTGTCTAGGAAAAGATCTAGCGTATCTGCAGATGAAGACGATC 1599
Query 1437 GCGGCGGCTGTTTTACTCCGGCACAGACTGACGGTGGCGGCGGGACACAAGGTGGAGCAG 1496
|||||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 1600 GCGGCGGCGGTTTTACTCAGGCATAGACTAACGGTGGCGCCGGGACACAAGGTGGAGCAG 1659
Query 1497 AAGATGTCGTTGACTTTGTTCATGAAGAACGGACTTCTGGTCAACGTGCACAAGAGGGAT 1556
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1660 AAGATGTCGTTGACTTTGTTCATGAAGAACGGACTTTTGGTCAACGTGCACAAGAGGGAT 1719
Query 1557 TTGGAAGTGATGATGAAGAGTCTCGTAACCAAAGAGAGAAACGACGTCGTTGTTCTTAAC 1616
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1720 TTGGAAGTGATGATGAAGAGTCTCGTACCCAAAGAGAGAAACGACGTCGTTGTTCTTAAC 1779
Query 1617 GGGAAATGCAACGGCGGTATCGGTGGTGAAGGCGTCGCCGTTAATGCGGCTGTGGCGGTT 1676
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1780 GGAAAATGCAACGGCGGTATCGGTG---AAGGCGTCGCCGTTAATGCGGCTGTGGCGGTT 1836
Query 1677 GCGGTGTAATGCGGCATT-TCGGGTTGAT 1704
|| ||||||||| || || ||||||||||
Sbjct 1837 GCCGTGTAATGCAGC-TTCTCGGGTTGAT 1864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84286715055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5