BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943724
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 641 0.0
> AT3G16010.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:5434014-5436264 FORWARD LENGTH=2077
Length=2077
Score = 641 bits (347), Expect = 0.0
Identities = 888/1134 (78%), Gaps = 97/1134 (9%)
Strand=Plus/Plus
Query 733 TATACCCCACCCTGTTGGG-CTTGTACTTGAAGTTCCGT-AAGTTTGAGAAAGCTTTACT 790
||||| |||| ||||||| || ||||| ||| | || ||| ||||||||||||||
Sbjct 937 TATACACCACGTTGTTGGGAATT-TACTTTAAGGTGGGTAAAG-TTGAGAAAGCTTTAGA 994
Query 791 TCTTGTGGAGGAGATGGAACAAACGCCAGGTTCCTCGCCAGCTTTTTATTCTTAC-TACA 849
|||| | ||||||||| ||| | | |||||| || ||| | |||| ||| ||||
Sbjct 995 TCTTTTCGAGGAGATGAAAC-GA-G-CAGGTTGTTCACCAACAGTTTA----TACGTACA 1047
Query 850 CGGAACTGATTAAGGAATTTGTCAGAG-TGGGGAAGATAGAAGAAGCTTATTG-TT-TAC 906
|||||||||| |||| | ||| || || | |||| | |||| ||||| ||| | || ||
Sbjct 1048 CGGAACTGATAAAGGGACTTGGCAAAGCT-GGGAGGGTAGATGAAGCATATGGCTTCTAT 1106
Query 907 ATCTGAACGTTTC-TAGAAATGCG-TTGAGTCCCGATCTTGTCTTCTTAAAGAAGCTGAT 964
| | || | | |||| ||| | |||| ||| ||| |||| |||||||| || |||||
Sbjct 1107 A-AAG-AC-ATGCTTAGAGATG-GATTGACTCCTGATGTTGTGTTCTTAAACAATCTGAT 1162
Query 965 TAACATTTTAAGCAAAATAGGTAGAGTGGAGCTGTTAACAAAGGTC-GC-G-G-G-T--G 1017
||||||||| ||||| | ||| |||||||| ||| ||||| ||| | | | | | |
Sbjct 1163 GAACATTTTAGGCAAAGTGGGTCGAGTGGAGGAGTTGACAAATGTCTTCAGTGAGATGGG 1222
Query 1018 --TGTGGACAT-TCATGCATAGAGCTTAT-TCGTACAGTGCTTTGATT-ATGACTCTATT 1072
|||||| || | | | | | || | || |||| | | ||||| | | |||| ||
Sbjct 1223 AATGTGGAGATGT-ACACCCACTG-TTGTCTCATACAATACCGTGATTAAAG-CTCTGTT 1279
Query 1073 TGAGTCCAAAGCACCTGATTCAGAAGTGAGCTATTTGTTTGATGAGATGAAGGCTGACGG 1132
|||||| ||||||| || ||| ||||| |||| || ||||||| ||||||| || ||| |
Sbjct 1280 TGAGTCAAAAGCACATGTTTCGGAAGTAAGCTCTTGGTTTGATAAGATGAAAGCAGACAG 1339
Query 1133 TGTTTCCCCT-GTTGGATTAACTTACGCAATCCTTATAAATGGCTT-TTGTGAAA-GAAA 1189
|||||||||| | || ||| |||||| ||||||||||| |||| || |||| ||| | ||
Sbjct 1340 TGTTTCCCCTAG-TGAATTCACTTACTCAATCCTTATAGATGG-TTATTGTAAAACG-AA 1396
Query 1190 TAAAGTGGAGAAAGCTCTGTTGCTTCTTGAGGAGATGGATGAGGAAGACCTTCCAACTT- 1248
|| ||| ||||||||||||||||| |||||||||||||||||| ||| ||||| |||
Sbjct 1397 TAGAGTAGAGAAAGCTCTGTTGCTGCTTGAGGAGATGGATGAGAAAGGTTTTCCACCTTG 1456
Query 1249 T--TCCAGCGTGTTACAGATTCATAAA-G-TC---GATAA---G-AAA-CCA-G--GCAG 1293
| | |||||| || ||| ||||||| | || || || | ||| | | ||||
Sbjct 1457 TCCTGCAGCGTATTGCAGCCTCATAAACGCTCTTGGA-AAGGCGAAAAGATATGAAGCAG 1515
Query 1294 -GAAATGAGCTATCTAAGGAA-GAAGAAGAGAATTTCCG-AATTGTAACTTGTCGAGTTT 1350
| |||||||||| ||||||| || |||| || ||| | || ||||| || |||||| |
Sbjct 1516 CG-AATGAGCTATTTAAGGAACTAA-AAGAAAACTTCGGCAA-TGTAAGTTCTCGAGTAT 1572
Query 1351 ATGCGGTCATGATCAAACATTTTGGG-AA-GCGTGGAAAGCT---C--A--TG--GATCT 1399
| || || |||||||||||||||||| || ||| || ||||| | | || |||||
Sbjct 1573 ACGCTGTGATGATCAAACATTTTGGGAAATGCG-GG-AAGCTCAGCGAAGCTGTAGATCT 1630
Query 1400 CTTCAATGAGATGATTAAGGAGGAGGACCAAGAAGAAAGTGGTCCTGATGTCTACGCTTA 1459
||||||||||||| | | || |||||| | ||||||||| ||||| || || ||
Sbjct 1631 CTTCAATGAGATG----A--A-GA--ACCAAG--G-AAGTGGTCCCGATGTTTATGCCTA 1678
Query 1460 CAATGCGCTTATGTCAGGGATGGTGAAGGCTGGTATGAT-AGATGAAGCTAATTTGTTGC 1518
||| || || |||||||| ||||| |||||||||||||| | | |||||||||| ||||
Sbjct 1679 CAACGCCCTCATGTCAGGAATGGTAAAGGCTGGTATGATCA-ACGAAGCTAATTCCTTGC 1737
Query 1519 TTAGAAAAATGGAAGAGAAGGGCTGCATCGCGGATGTGAATTCGCATAATATCATAATGA 1578
||||||| |||||||| || || |||| || ||| | || |||||||||||||| | |
Sbjct 1738 TTAGAAAGATGGAAGAAAACGGTTGCAGGGCCGATATAAACTCGCATAATATCATCCTCA 1797
Query 1579 ATGGGTTTGCTAGAACAGGTGTGCCAGAG-CGGGCTATAGAACTGTTTGAAACGATGAAG 1637
|||| |||||||||||||||||||| ||| |||||||||||| |||||||||| || |||
Sbjct 1798 ATGGATTTGCTAGAACAGGTGTGCC-GAGACGGGCTATAGAAATGTTTGAAACTATAAAG 1856
Query 1638 CATTCCGGGCTTAAGCCTGATGGTATCACTTACAATACTCTTCTTGGATG-TTTCGCACA 1696
||||| || |||||||||||||| ||||||| ||||||||||||||||| ||| |||||
Sbjct 1857 CATTCTGGTATTAAGCCTGATGGTGTCACTTATAATACTCTTCTTGGATGCTTT-GCACA 1915
Query 1697 TGCTGGAATGTTTAAGGAGGCTGCAAGAATGATGAGAGAGATGAAAGATGAAGGCTTTGT 1756
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1916 TGCTGGAATGTTTGAGGAGGCTGCAAGAATGATGAGAGAGATGAAAGATAAAGGCTTTGA 1975
Query 1757 GTATGATGCCATCACTTACTCATCTATACTTGAAGCTGACGGCAATGTGGATCA 1810
||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1976 GTATGATGCCATCACTTACTCATCTATACTTGACGCTGTTGGCAATGTGGATCA 2029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5