BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943730
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00330.1 | Symbols: CRCK2 | calmodulin-binding receptor-like... 1687 0.0
> AT4G00330.1 | Symbols: CRCK2 | calmodulin-binding receptor-like
cytoplasmic kinase 2 | chr4:142601-144523 REVERSE LENGTH=1518
Length=1518
Score = 1687 bits (913), Expect = 0.0
Identities = 1155/1264 (91%), Gaps = 48/1264 (4%)
Strand=Plus/Plus
Query 4 CTCCACGAAATATATCCGATGCCCAGTCGTCGGAGACATAGCTACGCCGGCAGATCTTCT 63
||||||||| | | ||||||||||||||||||||||||||||||| ||| | || |||
Sbjct 81 CTCCACGAACT-T-TCCGATGCCCAGTCGTCGGAGACATAGCTACACCGTCGGA---TCT 135
Query 64 CCTGCAACCACATCTTCTAGTTACAGTAACACTACTTTCACCGATCGTTCCTT-CC--CT 120
||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |
Sbjct 136 CCTGCAACCACATCTTCCAATTACAGTAACACTACTTTCACCGATCGTTCCTTCCCGACA 195
Query 121 ACCCCTGCCCGTAC-TCCCACCGACA-AATCCAGCTCCATCGCTCGTCGGATCTCCGGTA 178
|||||||||||||| | ||||||||| || ||| ||||||||||||||| ||||||||||
Sbjct 196 ACCCCTGCCCGTACAT-CCACCGACACAA-CCACCTCCATCGCTCGTCGCATCTCCGGTA 253
Query 179 TCTTCATCAGCTGCTTCACTCCTCCCGA-------T-C-CCGA-T--ATCGACCATTCAA 226
||||||||| |||||||||||||||||| | | || | | |||||| ||||||
Sbjct 254 TCTTCATCAACTGCTTCACTCCTCCCGATTCCGTTTCCTCCAACTACATCGACAATTCAA 313
Query 227 AGTCATCTTCCGACCATAATATCCGTAGTAGACGTAGCTCAACA-G--G-A--AGTGTAC 280
|||| ||||||||| ||||||||||||||||||||||||||||| | | | |||||||
Sbjct 314 AGTCCTCTTCCGACAATAATATCCGTAGTAGACGTAGCTCAACAGGAAGTAGTAGTGTAC 373
Query 281 AGAGGAGTTATGGGAATGTAAGCGAAAC--AG------AG-TTCACCTTCGATGAAATCT 331
||||||||||||| |||| || |||||| || || |||||||||||||||||||
Sbjct 374 AGAGGAGTTATGGAAATGCAAACGAAACAGAGCATACAAGATTCACCTTCGATGAAATCT 433
Query 332 ACGACGCTACCAAGAACTTCTCTCCATCCTTCAGGATCGGTCAAGGCGGTTTTGGCACTG 391
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 434 ACGACGCGACCAAGAACTTCTCTCCGTCCTTTAGGATCGGACAAGGCGGTTTTGGCACTG 493
Query 392 TTTACAAGGTCAAACTCCGAGATGGCAAAACCTTTGCTGTCAAACGGGCCAAAAAGAGTA 451
||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 494 TTTACAAGGTCAAACTCAGAGATGGCAAAACCTTTGCTGTGAAACGTGCCAAAAAGAGTA 553
Query 452 TGCATGACGACCGTCAA---G--G-TGCAGAGTTTATGAGTGAGATTCAGACCTTGGCTC 505
||||||||||||||||| | | ||||||||||||||||||||||||||| || ||||
Sbjct 554 TGCATGACGACCGTCAAGGTGCAGATGCAGAGTTTATGAGTGAGATTCAGACATTAGCTC 613
Query 506 AGGTTACGCATTTGAGTTTGGTTAAGTACTACGGATATGTGGTTCACGACGACGAGAAGA 565
| ||||| ||||||||||||||||| ||||| |||| ||| ||||| ||||||||||||
Sbjct 614 AAGTTACTCATTTGAGTTTGGTTAAATACTATGGATTTGTTGTTCATAACGACGAGAAGA 673
Query 566 TTCTCATTGTCGAGTATGTCGCCAATGGAACTCTTAGAGATCACTTGGATTGCAAGGAAG 625
||||| |||| |||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 674 TTCTCGTTGTGGAGTATGTAGCCAATGGAACTCTTAGAGATCACTTGGATTGTAAGGAAG 733
Query 626 GAAAGGCCCTCGACATGGCGACTCGGCTAGATATCGCAACCGATGTAGCTCATGCCATAA 685
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 734 GAAAGACTCTCGACATGGCGACTCGGTTAGATATCGCAACCGATGTAGCTCATGCCATAA 793
Query 686 CCTATCTTCACATGTATACACAGCCACCTATCATCCACAGAGACATCAAATCTTCAAACA 745
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 794 CCTATCTTCACATGTATACACAGCCACCTATCATCCACAGAGATATCAAATCTTCAAACA 853
Query 746 TTCTCCTCACTGAGAATTTCAGAGCCAAGGTTGCTGATTTC-GGTTTCGCAAGATTAGCT 804
|||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||
Sbjct 854 TTCTCCTCACTGAGAATTACAGAGCCAAGGTTGCTGATTTCGGGTTT-GCAAGATTAGCT 912
Query 805 CCAGATACCGAATCAGGAGCCACGCATATCTCAACACAAGTCAAAGGAACAGCAGGTTAC 864
|||||||| || ||||||||||||||| | |||||||||||||||||||| || ||||||
Sbjct 913 CCAGATACTGATTCAGGAGCCACGCATGTGTCAACACAAGTCAAAGGAACCGCTGGTTAC 972
Query 865 CTAGACCCAGAGTACTTAACCACGTACCAACTCACGGAGAAAAGCGACGTCTACTCCTTT 924
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||
Sbjct 973 TTAGACCCAGAGTACTTAACAACGTATCAACTCACAGAGAAAAGTGACGTCTACTCTTTT 1032
Query 925 GGTGTACTGCTCGTCGAGCTTCTCACAGGTCGGCGTCCCATTGAGCTTAGCAGAGGACAA 984
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1033 GGTGTACTGCTCGTCGAGCTTCTCACAGGTCGGCGTCCCATCGAGCTTAGCAGAGGACAA 1092
Query 985 AAAGAACGCATCACCATTAGATGGGCGATCAAGAAGTTCACGAGTGGAGATACGATATCG 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AAAGAACGCATCACCATTAGATGGGCGATCAAGAAGTTCACGAGTGGAGATACGATATCG 1152
Query 1045 GTATTGGACCCGAAGCTAGAACAAAATCCAGCGAACAGCTTAGCATTAGAGAAGGTATTG 1104
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 1153 GTATTGGACCCGAAGCTAGAACAGAATTCAGCGAACAACTTAGCATTAGAGAAGGTATTG 1212
Query 1105 GAGATGGCGTTTCATTGTCTAGCTCCTCATAGACGTTCGAGACCAAGCATGAAAAAATGC 1164
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GAGATGGCGTTTCAATGTCTAGCTCCTCATAGACGTTCGAGACCAAGCATGAAAAAATGC 1272
Query 1165 AGTGAGATTTTGTGGGGAATTCGTAAAGATTACAGAGAGTTCCTCAACACAAGTCTTTGA 1224
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1273 AGTGAGATTTTGTGGGGAATTCGTAAAGATTACAGAGAGTTGCTCAACACAAGTCTTTGA 1332
Query 1225 -GAT 1227
|||
Sbjct 1333 TGAT 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5