BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943733
Length=2206
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01580.1 | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction ox... 1164 0.0
> AT1G01580.1 | Symbols: FRO2, FRD1, ATFRO2 | ferric reduction
oxidase 2 | chr1:209395-213041 FORWARD LENGTH=2409
Length=2409
Score = 1164 bits (630), Expect = 0.0
Identities = 1700/2200 (77%), Gaps = 140/2200 (6%)
Strand=Plus/Plus
Query 64 GAGATGAGTTCAAAGATGTGATTAAGGGATTGATTAAGCTCTTAATGCTGGTGATTTTCC 123
|||| || || || ||| ||||||||||| ||| |||| |||| ||| ||||||||||||
Sbjct 47 GAGAAGAATTTAAGGATATGATTAAGGGAGTGACTAAGTTCTTGATGATGGTGATTTTCC 106
Query 124 TAGGAATCATC-TTCATTTGGGCCCTTATGCCAACCA-TGGTCTATCGAACCAAGTGGTT 181
| |||| |||| | | ||||| | | ||||||| || | ||||||||||||||||||
Sbjct 107 TTGGAACCATCATGC-TTTGGATCATGATGCCAA-CACTAACCTATCGAACCAAGTGGTT 164
Query 182 AAACC-CTGTCATGCGTACCGAGTTTGGTACATCGACTTATTTTGGTGCTATAGGCTTGA 240
|| | || |||||| | ||||||| ||||| |||||||||||||| | ||| ||
Sbjct 165 --GCCAC-ATC-TGCGTATCAAGTTTGGAACATCCACTTATTTTGGTGCCACAGGGACGA 220
Query 241 C-CTTTTTCATGT-TCATGTTCCCAATGGTCCTCATGGCTTGTTTGGGATGTCTCTACCT 298
| | ||||||||| | |||||||||||| | || | ||||||||||||||| |||| ||
Sbjct 221 CGC-TTTTCATGTAT-ATGTTCCCAATGATGGTCGTAGCTTGTTTGGGATGTGTCTATCT 278
Query 299 TCACTTGAAGAAACAAAAGAAT-ACTA-ATCACCTCGCTAGGGAGAAGATAACTGACGGG 356
|||||| ||||| | |||| | | | | || ||| |||||||| | || | ||
Sbjct 279 TCACTTCAAGAATCGAAAG--TCGCCACACCATATCGATAGGGAGACG--AA--G--GGA 330
Query 357 GGAGTTTTCGCAG-CAA-TGAA-AAGGCCAATGCTGGTCAAAGGGCCATTGGGGATAGTC 413
|||| | | | || || | || || ||||||| | || || |||||||| || ||||||
Sbjct 331 GGAG-TGT-GGAGTAAACT-AAGAAAGCCAATGTTAGTGAAGGGGCCATTAGGAATAGTC 387
Query 414 TCAGCAACTGAGTTAATCTTGTTGGCAATGTTTGTAGCTCTTCTTCTTTGGAACTTTTTC 473
|||| |||||| | | ||| ||||| |||||||| ||||||||||| ||| |||| ||
Sbjct 388 TCAGTGACTGAGATCACCTTCTTGGCGATGTTTGTGGCTCTTCTTCTCTGGTGCTTTATC 447
Query 474 A-TGTACATGCGCAAT-GCTTTC-CCTACCATTACTCCTCAATCAGCCGCTAAACATCAC 530
| | || |||||||| || ||| || || || |||||| ||||||| || |||| ||
Sbjct 448 ACT-TATTTGCGCAATAGC-TTCGCC-ACTATCACTCCTAAATCAGCTGCCGCACATGAC 504
Query 531 CAAAAATTATGGCAAGC-AAGGTTGGAGGCAATGGCAG-TAAGGATCGGGCTAG-TCGGT 587
|| || |||||||| || | |||| || ||| | ||||| | || || | ||||
Sbjct 505 GAATCTTTGTGGCAAGCGAA-GCTGGAATCAGCGGC-GCTAAGGTTAGGACT-GATCGGA 561
Query 588 AACTGT-TGTCTAGCTTTCCTATTCATACCGGTGG-TGCGTGGATCATCATTGCTTCCGG 645
||| | ||| | || ||| | ||| ||||||||| | ||||| ||||| ||||| ||||
Sbjct 562 AAC-ATATGTTTGGCGTTCTTGTTCTTACCGGTGGCT-CGTGGGTCATCGTTGCTACCGG 619
Query 646 TTGTAGGG-CTGACGTCAGAGTCAAGCATCAAGTACCATATTTGGCTTGGTCACATGCTC 704
| ||| | || || |||||||||||||| |||||||| ||||| || |||||| ||
Sbjct 620 CAAT-GGGATTAACCTCGGAGTCAAGCATCAAATACCATATATGGCTCGGCCACATGGTC 678
Query 705 ATGACCCTCTTCACCGCTCATGGTCTTTGTTTCATTGTCTATTGGGCCTCAATGCATGAA 764
||| |||| ||||||| |||||||||||||| ||| | || ||||||||||||||||||
Sbjct 679 ATGGCCCTTTTCACCGTTCATGGTCTTTGTTACATAATTTACTGGGCCTCAATGCATGAA 738
Query 765 ATCTCTCAGATGGTGAGT-TGGGGTAAG-ACCGAGATGTCGAATGTT-GCCGGGGAGATA 821
||||| |||||| | | | |||| || | | | | | || ||| || ||||| ||||||
Sbjct 739 ATCTCCCAGATGATCA-TGTGGGATACGAAAGGTG-TCTCAAAT-TTGGCCGGAGAGATA 795
Query 822 ACTTTGTTGTCTGGACTTGTGATGTGGGCCACCACATATCC-ATCGATTAGAAGGAGATT 880
|| || | | ||||||||||||||||||||||||||||| | ||| || || |||||
Sbjct 796 GCTCTGGCGGCCGGACTTGTGATGTGGGCCACCACATATCCGA-AGATAAGGAGAAGATT 854
Query 881 CTTTGAAGTTTTCTTCTATAGTCACTACCTTTACATCGTCTTCATGCTCTTCTACGTCCT 940
||| ||||| |||||||| | |||||| || |||||||||||||||||||||| |||||
Sbjct 855 CTTCGAAGTCTTCTTCTACACTCACTATCTCTACATCGTCTTCATGCTCTTCTTTGTCCT 914
Query 941 CCACGTAGGCGT-CGCCTTCTGCTTTATCACCT-TCCCCGGTTTCTATATCTTCATGGTC 998
|||||| ||| | | |||| ||| ||| || |||| |||||||| |||||| | |||
Sbjct 915 CCACGTCGGCATAAG-TTTCTCCTTCATC-GCTCTCCCTGGTTTCTACATCTTCTTAGTC 972
Query 999 GATCGTTT-CTTGAGGTTTCTACAGTCACGTGACAATATTCGGTTGAGCTCTGCACGTG- 1056
|||||||| ||| ||||||| ||||||||||| ||| |||| ||| | |||| || |
Sbjct 973 GATCGTTTCCTT-CGGTTTCTTCAGTCACGTGAAAATGTTCGCTTGCTCGCTGCTCG-GA 1030
Query 1057 TTCTTCCGTCCGACACCGTTGAGCTCACTTTCTTCAAAAA--CAAAGGATTGGTGTATAA 1114
||||||| |||||||| | ||||||||||||| |||||| | || | ||||| ||||
Sbjct 1031 TTCTTCCTTCCGACACTATGGAGCTCACTTTCTCCAAAAACTCTAA-G-TTGGTTTATAG 1088
Query 1115 TCCGACGAGCATATTGTTTGTGAACATACCGAGCATTTCAAAGCTGCAGTGGCATCCATT 1174
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1089 CCCGACGAGCATAATGTTTGTGAACATACCGAGCATTTCAAAGCTGCAATGGCATCCGTT 1148
Query 1175 TTCGATTACTTCGAGCAGTAACCTAGAAGCAGATAAGCTAAGCATTGTGATTAAGAGTGA 1234
| |||| ||||| || || || || ||| |||| |||||||| ||||| || |||| ||
Sbjct 1149 TACGATAACTTCCAGTAGCAAACTCGAACCAGAGAAGCTAAGTATTGTTATCAAGAAAGA 1208
Query 1235 AGGGAAATGGTCTACAAAGCTTTACGAGATGCTTTCTTCTTCTGATCATATCGACAGTTC 1294
||| |||||||| || |||||| || ||| |||||||||||||||||| |||||| | |
Sbjct 1209 AGGCAAATGGTCAACTAAGCTTCACCAGAGGCTTTCTTCTTCTGATCAGATCGACCGA-C 1267
Query 1295 TCTCTCTGTTTCTGTCGAAGGACCATATGGTCCTACTTCAATAGATTTCCTAAGGCACGA 1354
| | |||||||||| ||||| || || || ||| |||| |||||| ||||||| ||
Sbjct 1268 T-TG-CTGTTTCTGTAGAAGGTCCTTACGGCCCTGCTTCCGCCGATTTCTTAAGGCATGA 1325
Query 1355 -GTCTTTGGTTATGGT-TAGCGGAGGCAGCGGAATTACACCATTCATCTCCGTAATCCGC 1412
| ||||||||||||| | ||||||| ||||| || || || || ||||| || || ||
Sbjct 1326 AG-CTTTGGTTATGGTGT-GCGGAGGAAGCGGGATAACTCCGTTTATCTCTGTTATTCGT 1383
Query 1413 GACTTAATCGCCATAACCCAAAC--AACTTCATGTGAAATCCCCAAAATAACTCTGATTT 1470
|| || ||||||| || ||||| || |||| ||||||| ||||||||||| ||||
Sbjct 1384 GATTTGATCGCCACAAGCCAAAAGGAAA--CATGCAAAATCCCAAAAATAACTCTCATTT 1441
Query 1471 GTGCATTCAAGAACG-CTTCTGACATCGCCATGCTTGACCTAATCCTCCC-TACATCAGG 1528
|||| || ||||| | |||| || ||| ||||||| || || || | || | ||| ||
Sbjct 1442 GTGCGTTTAAGAA-GTCTTCAGAGATCTCCATGCTCGATCTTGTCTTGCCATT-ATCCGG 1499
Query 1529 TCTCCA-ATT-ATCAA-C-T--GACCTGAATATCCAAATCGAAGCCTTCATCACCAAAGA 1582
||| | | | | | | | | ||| | || ||| |||||||||||||||| ||| |||
Sbjct 1500 TCTTGAGACTGAACTATCCTCCGACATTAACATCAAAATCGAAGCCTTCATAACCCGAGA 1559
Query 1583 GAAAGAACCAAGAAACGAAG-AAACA-CAG--AAGATCAGAAC-CATCTGGTTCAAACCA 1637
|| || || || | |||| ||| | | | || |||| ||| | ||||||||||||||
Sbjct 1560 TAATGATGCAGGAGATGAAGCAAA-AGCTGGGAAAATCAAAACTC-TCTGGTTCAAACCA 1617
Query 1638 AATCTCTCGGACCAA-CCAATCTCAGCAATCCTAGGACCAAACTCATGGCTTTGCCTCGC 1696
| ||| || |||||| ||| ||||| ||||||| |||||||||||||||||||| ||||
Sbjct 1618 AGTCTTTCAGACCAATCCA-TCTCATCAATCCTCGGACCAAACTCATGGCTTTGGCTCGG 1676
Query 1697 AGCCATCCTCGCATCTTCCACACTA-ATCTTCATGATAATCATCGG-AGTCATGACAAGA 1754
|| || ||||||||||| || |||||||||||||| || || | |||| || ||
Sbjct 1677 TGCAATTCTCGCATCTTCGTT-CTTGATCTTCATGATAATTATTGGTA-TCATCACTAGG 1734
Query 1755 TACTACATTTACCCGATCGATCAAAACAAGAACAAG-TACAATGCT--G-CTTCAAGATC 1810
|| ||||||||||||||||| || |||| |||||| | | || || | |||||| | |
Sbjct 1735 TATTACATTTACCCGATCGACCACAACACCAACAAGAT-CTATTCTTTGACTTCAAAAAC 1793
Query 1811 AATCCT-T-TATCTTCTGGTCCTCTGTGTTAGCATCATGGTGACGTCAAGTGCAGCTGTA 1868
||| | | |||||| |||| ||| || ||||| |||| ||| | ||||| ||| |
Sbjct 1794 CATCATATATATCTT--GGTCATCTCCGTGAGCATAATGGCGACTTGTAGTGCGGCTATG 1851
Query 1869 TTGTGGAATAAGAAGAAGTACAATG-TAGAGA-GCA-GTAAACAGGTCCAAACCGTCGAC 1925
|||||||| ||||||||||| || || || | | ||||||||||||||| |||||||
Sbjct 1852 TTGTGGAACAAGAAGAAGTA---TGGTAAAGTTGAAAGTAAACAGGTCCAAAACGTCGAC 1908
Query 1926 -GTACCAAGC-CCAACATTTTCTCCTAGCTCAT---GGGCTTACA-------GAGA-AAT 1972
|| ||| | ||||||| |||||||| ||||| ||| ||||| |||| ||
Sbjct 1909 CGT-CCAT-CTCCAACATCTTCTCCTACCTCATCATGGGGTTACAATTCCTTGAGAGAAA 1966
Query 1973 T-GAGAGTAATCCTCAAGAGTCACTTGTTCAATGCACCAACCTCCATTTCGGTGAAAGAC 2031
| || |||| || ||||| || || || ||| ||||||| || ||||| || |||||||
Sbjct 1967 TCGAAAGTACGCCACAAGAATCGCTCGTGCAACGCACCAATCTGCATTTTGGAGAAAGAC 2026
Query 2032 C-AGACCTCAAGAAGA-TTCTACTTGA-GACCAAAGGTTCAAGCGTGGGAGTTATGGTGT 2088
| | | |||||||| | |||||||||| | || ||||| || ||||||||| | || |
Sbjct 2027 CTA-ATCTCAAGAA-ACTTCTACTTGATGTGGAA-GGTTCGAGTGTGGGAGTTCTTGTTT 2083
Query 2089 GCGGTCCGAAGAAGATGAGACAAAAAGTGGCC-AAGATTTGTTCTTCTGGTTTGGCTGAG 2147
| ||||| ||||||||||||||||| || || || || ||||| |||||||||||||||
Sbjct 2084 GTGGTCCTAAGAAGATGAGACAAAAGGTTGCGGAA-ATATGTTCCTCTGGTTTGGCTGAG 2142
Query 2148 AATCTTCACTTTGAATCCATCAGTTTCAGCTGGTGATTGC 2187
|||||||| |||||||| ||||||||||||||||||||||
Sbjct 2143 AATCTTCATTTTGAATCTATCAGTTTCAGCTGGTGATTGC 2182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109437188100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5