BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg943735
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00290.1 | Symbols: | Mechanosensitive ion channel protein ... 1971 0.0
AT4G00234.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 933 0.0
AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein |... 195 2e-48
> AT4G00290.1 | Symbols: | Mechanosensitive ion channel protein
| chr4:122851-125591 REVERSE LENGTH=1859
Length=1859
Score = 1971 bits (1067), Expect = 0.0
Identities = 1326/1443 (92%), Gaps = 50/1443 (3%)
Strand=Plus/Plus
Query 156 AACTCTCATGCCAGGTCCTTTACTTGCGGAAGAAACCCTCTTGATGGACCAAAAGCTTCT 215
||||||||||||||| ||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 207 AACTCTCATGCCAGGGCCTTTACTTGC-G--GAAACCTTCTTGATGGACCAAAAGCTTCT 263
Query 216 CCTTCCATGGTC-CC-TTT--T---AC--ACGCCTGCAT-A--ATGCTAAGCCTTTCAAT 263
||||| ||| || || ||| | || |||||||||| | ||||||||||||||||
Sbjct 264 CCTTCGATGATCTCCTTTTCATCGAACATACGCCTGCATAATGATGCTAAGCCTTTCAA- 322
Query 264 TACTCGATCCCTTTCTTAGGCCATTCGTCTTACGCACGAGCTTTCAGCTCCAAATC---T 320
| | | |||||||||||| || |||||||||||||||||||||||||| |
Sbjct 323 T--T--A-------CTTAGGCCATTCTTCGTACGCACGAGCTTTCAGCTCCAAATCTGAT 371
Query 321 GA--T--G--GTATTGTAGCC-C--------CTGG---TGGTGATGGGAATGGGAATGAC 362
|| | | ||||||||||| | |||| ||||||||||||||||||||
Sbjct 372 GATTTCGGAAGTATTGTAGCCTCTGGTGTTACTGGCTCTGGTGATGGGAATGGGAATGGG 431
Query 363 ATTGATTGGGTTGAGAAAGCCAAAGATGTGTTGCAGACTAGTGTCGATGCGGTTTCTGAG 422
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||
Sbjct 432 AATGATTGGGTTGAGAAAGCTAAAGATGTGTTGCAGACTAGTGTCGATGCTGTTACTGAG 491
Query 423 ACTGCAAGGAAGACTAGAGAAGCCTCTGATGAGATGATCCCTCATGTTCAGCAATTCCTA 482
||||||| |||||||| ||| | |||||||||||||||||||||||||||||| |||||
Sbjct 492 ACTGCAAAGAAGACTAAAGATGTCTCTGATGAGATGATCCCTCATGTTCAGCAGTTCCTT 551
Query 483 GACTCCAACCCTTATCTTAAAGAAGTTATCGTTCCCATCAGTCTCACTATGACTGGTACT 542
||||| ||||||||||||||||| ||||| ||||| | |||||||||||||||||||||
Sbjct 552 GACTCTAACCCTTATCTTAAAGATGTTATAGTTCCTGTTAGTCTCACTATGACTGGTACT 611
Query 543 TTATTTGCTTGGCTTGTGATGCCTAGGATTCTCAGGAGGTTTCACACTTATGCTATGCAA 602
|||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 612 TTATTTGCTTGGGTTGTGATGCCTAGGATTCTTAGAAGGTTTCACACTTATGCTATGCAA 671
Query 603 AGTTCCGCTAAGCTGCTTCCCGTTGGCTTCTCTAACGAAGATGTTCCATATGAGAAAAGC 662
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 672 AGTTCCGCTAAACTGCTTCCCGTTGGCTTCTCTAACGAAGATGTTCCTTATGAGAAAAGC 731
Query 663 TTTTGGGGAGCTTTAGAGGATCCTGCTCGTTACTTAGTGACATTCATAGCTTTTGCACAA 722
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 732 TTTTGGGGAGCTTTAGAGGATCCTGCTCGTTACTTGGTGACCTTCATTGCTTTTGCACAA 791
Query 723 ATTGCCGCAATGGTGGCGCCAACAACTATAGCAGCTCAATACTTTTCCCCGACAGTGAAG 782
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 792 ATTGCTGCAATGGTGGCGCCAACAACTATAGCAGCTCAATACTTTTCCCCGACTGTGAAG 851
Query 783 GGAGCAGTCATTCTCTCACTTGTGTGGTTCCTTTATCGGTGGAAGACAAATGTGATTACC 842
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 852 GGAGCGGTTATTCTCTCACTTGTGTGGTTCCTATATCGGTGGAAGACCAATGTGATTACC 911
Query 843 CGAATGTTGTCTGCTAAGAGTTTTGGTGGGCTAGATAGGGAGAAGGTATTGACTTTAGAC 902
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 912 CGAATGTTGTCGGCTAAGAGTTTTGGTGGGCTTGATAGGGAGAAGGTATTGACTTTAGAC 971
Query 903 AAAGTATCATCAGTTGGTCTTTTTGCAATCGGTTTGATGGCTTCAGCTGAAGCATGTGGT 962
||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 972 AAAGTATCATCTGTTGGTCTTTTCGCTATCGGTTTGATGGCTTCTGCTGAAGCATGTGGT 1031
Query 963 GTAGCTGTTCAATCTATCTTGACAGTTGGTGGAGTTGGAGGGGTAGCCACCGCATTTGCT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 GTAGCTGTTCAATCTATCTTGACAGTTGGTGGAGTTGGAGGGGTAGCCACCGCATTTGCT 1091
Query 1023 GCCAGAGATATCCTTGGTAATGTGCTGAGTGGTCTGTCAATGCAATTCTCGCGGCCGTTC 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1092 GCCAGAGATATCCTTGGTAATGTGCTGAGTGGTCTGTCAATGCAATTCTCGCGGCCTTTC 1151
Query 1083 TCTATGGGTGATACTATCAAAGCTGGATCCGTAGAAGGTCAAGTTGTTGAAATGGGACTT 1142
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1152 TCTATGGGTGATACTATCAAAGCTGGATCCGTAGAAGGTCAAGTTATTGAAATGGGACTT 1211
Query 1143 ACGACAACATCTTTGCTGAATGCAGAAAAATTTCCGGTTTTGGTACCCAATTCACTGTTT 1202
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1212 ACGACAACATCTTTGTTGAATGCAGAAAAATTTCCGGTTTTGGTACCCAATTCACTGTTT 1271
Query 1203 TCGAGTCAGGTAATTGTGAATAAATCACGTGCTCAGTGGCGAGCAATAGCATCCAAGATC 1262
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1272 TCGAGTCAGGTGATTGTGAATAAGTCACGTGCTCAGTGGCGAGCAATAGCATCCAAGATC 1331
Query 1263 CCACTGCAGATCGATGACTTGGATAAGATTTCTCAAATATCTAATGAAATCAAGGAAACG 1322
||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||| |
Sbjct 1332 CCACTGCAGATCGATGACTTGGATATGATTCCTCAAATATCAAATGAAATCAAGGAAATG 1391
Query 1323 TTGAGGTCAAACACAAAAGTTTTCTTAGGCAAAGAAGCTCCTCACTGTTACTTATCGCGA 1382
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1392 TTGAGGTCCAACACAAAAGTTTTCTTAGGAAAAGAAGCTCCACACTGTTACTTATCGCGA 1451
Query 1383 GTGGAAAAATCTTTCGCTGAACTTACCATTGGGTGCAATCTGAAACACATGGGAAAAGAG 1442
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1452 GTGGAAAAATCTTTCGCTGAACTTACCATTGGGTGCAATCTGATACGCATGGGAAAAGAA 1511
Query 1443 GAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGTGGTTAAGATCATAAAGAAGCAC 1502
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1512 GAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGCGGTGAAGATCATAAAGAAGCAC 1571
Query 1503 GGTGCGTCGCTGGGTACCACCTGGGACAATCCTACGGTT-TGAGTGATCATTTGGTAGAG 1561
|||| |||| | |||||||||||||||||| |||| || ||||||||||||| ||||||
Sbjct 1572 GGTGTGTCGTTAGGTACCACCTGGGACAATTCTACA-TTGTGAGTGATCATTTTGTAGAG 1630
Query 1562 ACA 1564
|||
Sbjct 1631 ACA 1633
Score = 91.6 bits (49), Expect = 2e-17
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 19 CAATGGCCGGAGTTAGGTTATCGCTTCTCAAGTCACTTCAAAGATCAATAAA 70
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 118 CAATGGCCGGAGTTAGGTTATCGCTTCTCAAGTCAATTCAAAGATCAATAAA 169
> AT4G00234.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1);
Has 57 Blast hits to 57 proteins in 12 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr4:100919-101788
FORWARD LENGTH=792
Length=792
Score = 933 bits (505), Expect = 0.0
Identities = 662/736 (90%), Gaps = 18/736 (2%)
Strand=Plus/Plus
Query 278 CTTAGGCCATTCGTCTTACGCACGAGCTTTCAGCTCCAAATC---TGA--T--G--GTAT 328
|||| |||||||||| |||||||||||||||||||||||||| ||| | | ||||
Sbjct 57 CTTAAGCCATTCGTCGTACGCACGAGCTTTCAGCTCCAAATCTGATGATTTCGGAAGTAT 116
Query 329 TGTAGCCCCTGGTGGTGA-T--G---GG-AATGGGAATGACATTGATTGGGTTGAGAAAG 381
|||||| ||||| || | | | || ||||||||| | |||||||||||||||||
Sbjct 117 TGTAGCATCTGGT-GTTACTGGGTCTGGTGATGGGAATGGGAATGATTGGGTTGAGAAAG 175
Query 382 CCAAAGATGTGTTGCAGACTAGTGTCGATGCGGTTTCTGAGACTGCAAGGAAGACTAGAG 441
| ||||||||| |||||||||||||| |||| ||| |||||||||||| |||||||| ||
Sbjct 176 CTAAAGATGTGGTGCAGACTAGTGTCAATGCTGTTGCTGAGACTGCAAAGAAGACTAAAG 235
Query 442 AAGCCTCTGATGAGATGATCCCTCATGTTCAGCAATTCCTAGACTCCAACCCTTATCTTA 501
| | ||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 236 ATGTCTCTGATGAGATGATTCCTCATGTTCAGCAGTTCCTTGACTCTAACCCGTATCTCA 295
Query 502 AAGAAGTTATCGTTCCCATCAGTCTCACTATGACTGGTACTTTATTTGCTTGGCTTGTGA 561
|||| ||||| ||||| | ||||||||| ||||||||||||||||||||||| | ||||
Sbjct 296 AAGATGTTATAGTTCCTGTTAGTCTCACTGTGACTGGTACTTTATTTGCTTGGATAGTGA 355
Query 562 TGCCTAGGATTCTCAGGAGGTTTCACACTTATGCTATGCAAAGTTCCGCTAAGCTGCTTC 621
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 356 TGCCTAGGATTCTTAGAAGGTTTCACACTTATGCTATGCAAAGTTCCGCTAAACTGCTTC 415
Query 622 CCGTTGGCTTCTCTAACGAAGATGTTCCATATGAGAAAAGCTTTTGGGGAGCTTTAGAGG 681
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 416 CCGTTGGCTTCTCTAATGAAGACATTCCTTATGAGAAAAGCTTTTGGGGAGCTTTAGAGG 475
Query 682 ATCCTGCTCGTTACTTAGTGACATTCATAGCTTTTGCACAAATTGCCGCAATGGTGGCGC 741
|||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 476 ATCCTGCTCGTTACTTGGTGACCTTCATTGCTTTTGCACAAATTGCTGCAATGGTGGCGC 535
Query 742 CAACAACTATAGCAGCTCAATACTTTTCCCCGACAGTGAAGGGAGCAGTCATTCTCTCAC 801
|||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 536 CAACAACTATAGCAGCTCAATACTTTTCCCCGACTGTGAAGGGAGCGGTTATTCTCTCAG 595
Query 802 TTGTGTGGTTCCTTTATCGGTGGAAGACAAATGTGATTACCCGAATGTTGTCTGCTAAGA 861
||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 596 TTGTGTGGTTCCTGTATCGGTGGAAGACCAATGTGATTACCCGAATGTTGTCGGCTAAGA 655
Query 862 GTTTTGGTGGGCTAGATAGGGAGAAGGTATTGACTTTAGACAAAGTATCATCAGTTGGTC 921
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 656 GTTTTGGTGGGCTTGATAGGGACAAGGTATTGACTTTAGACAAAGTATCATCTGTTGGTC 715
Query 922 TTTTTGCAATCGGTTTGATGGCTTCAGCTGAAGCATGTGGTGTAGCTGTTCAATCTATCT 981
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 716 TTTTCGCTATCGGTTTGATGGCTTCTGCTGAAGCATGTGGTGTAGCTGTTCAATCTATCT 775
Query 982 TGACAGTTGGTGGAGT 997
|||||||||||| |||
Sbjct 776 TGACAGTTGGTG-AGT 790
> AT4G00231.1 | Symbols: MEE50 | ARM repeat superfamily protein
| chr4:97499-99353 FORWARD LENGTH=1760
Length=1760
Score = 195 bits (105), Expect = 2e-48
Identities = 124/133 (93%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 1433 GGGAAAAGAGGAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGTGGTTAAGATCAT 1492
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1474 GGGAAAAGAGGAGCTATACAATACACAACAAGAGGTCCTTCTTGAGGCGGTGAAGATCAT 1533
Query 1493 AAAGAAGCACGGTGCGTCGCTGGGTACCACCTGGGACAATCCTACGGTT-TGAGTGATCA 1551
|||||||||||||| |||||| |||||||||||||||||| |||| || ||||||||||
Sbjct 1534 AAAGAAGCACGGTGTGTCGCTAGGTACCACCTGGGACAATTCTACA-TTGTGAGTGATCA 1592
Query 1552 TTTGGTAGAGACA 1564
||| |||||||||
Sbjct 1593 TTTTGTAGAGACA 1605
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5