BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg943750

Length=203
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35730.1 | Symbols:  | Regulator of Vps4 activity in the MVB...   220    3e-57


> AT4G35730.1 | Symbols:  | Regulator of Vps4 activity in the MVB 
pathway protein | chr4:16931039-16933356 FORWARD LENGTH=1588
Length=1588

 Score =  220 bits (119),  Expect = 3e-57
 Identities = 133/140 (95%), Gaps = 0/140 (0%)
 Strand=Plus/Plus

Query  50   AAAAGCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTATAAGGAACAAGAGA  109
            ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct  160  AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA  219

Query  110  TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGATGTTCTTCTTCAATCCGGTCAAAAT  169
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct  220  TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT  279

Query  170  GCCACCGCTTGAATCAGAGT  189
            ||||| ||| ||||||||||
Sbjct  280  GCCACTGCTCGAATCAGAGT  299



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9054243180


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5