BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg943750 Length=203 Score E Sequences producing significant alignments: (Bits) Value AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB... 220 3e-57 > AT4G35730.1 | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr4:16931039-16933356 FORWARD LENGTH=1588 Length=1588 Score = 220 bits (119), Expect = 3e-57 Identities = 133/140 (95%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 50 AAAAGCAAAACGGCGGCGAAGATGGATGTGGCTCGGATAAAGCTTATAAGGAACAAGAGA 109 ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 160 AAATGCAAAACGGCGGCGAAGATGGCTGTGGCTCGTATAAAGCTTATAAGGAACAAGAGA 219 Query 110 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGATGTTCTTCTTCAATCCGGTCAAAAT 169 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 220 TTAGTTGTGGTGAAGCAAATGAGGCGTGACATCGCTGTTCTTCTTCAATCCGGTCAAGAT 279 Query 170 GCCACCGCTTGAATCAGAGT 189 ||||| ||| |||||||||| Sbjct 280 GCCACTGCTCGAATCAGAGT 299 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9054243180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5